Hb_001386_080

Information

Type -
Description -
Location Contig1386: 127707-138422
Sequence    

Annotation

kegg
ID rcu:RCOM_0471660
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID KDP36996.1
description hypothetical protein JCGZ_06052 [Jatropha curcas]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID A0A067KL62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06052 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_080 0.0 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
2 Hb_008092_140 0.13898561 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
3 Hb_002094_040 0.1439686172 - - Organic cation transporter protein [Aegilops tauschii]
4 Hb_002997_130 0.1644878912 - - -
5 Hb_028462_010 0.164638639 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
6 Hb_123098_010 0.164639762 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_004899_270 0.1646482901 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
8 Hb_000111_160 0.164659854 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
9 Hb_018006_020 0.1646853496 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
10 Hb_006053_010 0.1646925044 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
11 Hb_000914_160 0.1646976145 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
12 Hb_007393_010 0.1647054874 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_000413_310 0.1647462713 - - -
14 Hb_000098_160 0.1647515613 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003052_160 0.1647515613 - - -
16 Hb_002130_010 0.1647783943 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_061463_010 0.1647837596 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_185616_010 0.1647992938 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_012543_020 0.1648022075 - - -
20 Hb_000482_130 0.164804024 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_001386_080 Hb_001386_080 Hb_008092_140 Hb_008092_140 Hb_001386_080--Hb_008092_140 Hb_002094_040 Hb_002094_040 Hb_001386_080--Hb_002094_040 Hb_002997_130 Hb_002997_130 Hb_001386_080--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_001386_080--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_001386_080--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_001386_080--Hb_004899_270 Hb_008092_140--Hb_002997_130 Hb_008092_140--Hb_028462_010 Hb_008092_140--Hb_123098_010 Hb_008092_140--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_008092_140--Hb_000111_160 Hb_002094_040--Hb_002997_130 Hb_002094_040--Hb_028462_010 Hb_002094_040--Hb_123098_010 Hb_002094_040--Hb_004899_270 Hb_002094_040--Hb_000111_160 Hb_002997_130--Hb_028462_010 Hb_002997_130--Hb_123098_010 Hb_002997_130--Hb_004899_270 Hb_002997_130--Hb_000111_160 Hb_018006_020 Hb_018006_020 Hb_002997_130--Hb_018006_020 Hb_006053_010 Hb_006053_010 Hb_002997_130--Hb_006053_010 Hb_028462_010--Hb_123098_010 Hb_028462_010--Hb_004899_270 Hb_028462_010--Hb_000111_160 Hb_028462_010--Hb_018006_020 Hb_028462_010--Hb_006053_010 Hb_000914_160 Hb_000914_160 Hb_028462_010--Hb_000914_160 Hb_123098_010--Hb_004899_270 Hb_123098_010--Hb_000111_160 Hb_123098_010--Hb_018006_020 Hb_123098_010--Hb_006053_010 Hb_123098_010--Hb_000914_160 Hb_004899_270--Hb_000111_160 Hb_004899_270--Hb_018006_020 Hb_004899_270--Hb_006053_010 Hb_004899_270--Hb_000914_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.010908 0.013862 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.257318 0.281739 0 0 0

CAGE analysis