Hb_001386_090

Information

Type -
Description -
Location Contig1386: 155113-159974
Sequence    

Annotation

kegg
ID rcu:RCOM_1676990
description hypothetical protein
nr
ID XP_012070317.1
description PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RBH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10584: 155124-159637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_090 0.0 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
2 Hb_003397_030 0.0764776702 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
3 Hb_000438_130 0.0779877746 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
4 Hb_001711_060 0.0813222243 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
5 Hb_000169_070 0.0998574247 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
6 Hb_004517_030 0.1094271054 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000392_450 0.114708194 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
8 Hb_001519_170 0.1178998811 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
9 Hb_006252_030 0.1258555171 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
10 Hb_012653_030 0.128551134 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_007217_010 0.1316598589 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000212_250 0.1383140928 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000000_180 0.1389772526 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
14 Hb_000146_030 0.1399260625 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
15 Hb_012545_040 0.140219008 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_002498_160 0.1421985525 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
17 Hb_002078_120 0.1426864454 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
18 Hb_000056_310 0.1439425628 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
19 Hb_002027_320 0.1455226777 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
20 Hb_000035_210 0.1455434153 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]

Gene co-expression network

sample Hb_001386_090 Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_001386_090--Hb_003397_030 Hb_000438_130 Hb_000438_130 Hb_001386_090--Hb_000438_130 Hb_001711_060 Hb_001711_060 Hb_001386_090--Hb_001711_060 Hb_000169_070 Hb_000169_070 Hb_001386_090--Hb_000169_070 Hb_004517_030 Hb_004517_030 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450 Hb_003397_030--Hb_000169_070 Hb_003397_030--Hb_001711_060 Hb_003397_030--Hb_004517_030 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050 Hb_003397_030--Hb_000438_130 Hb_000438_130--Hb_000392_450 Hb_000438_130--Hb_001711_060 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_012653_030 Hb_012653_030 Hb_000438_130--Hb_012653_030 Hb_001519_170 Hb_001519_170 Hb_001711_060--Hb_001519_170 Hb_001711_060--Hb_012653_030 Hb_000146_030 Hb_000146_030 Hb_001711_060--Hb_000146_030 Hb_006252_030 Hb_006252_030 Hb_000169_070--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_000169_070--Hb_000322_040 Hb_003470_100 Hb_003470_100 Hb_000169_070--Hb_003470_100 Hb_004007_170 Hb_004007_170 Hb_000169_070--Hb_004007_170 Hb_004517_030--Hb_000392_450 Hb_000212_250 Hb_000212_250 Hb_004517_030--Hb_000212_250 Hb_007217_010 Hb_007217_010 Hb_004517_030--Hb_007217_010 Hb_003874_010 Hb_003874_010 Hb_004517_030--Hb_003874_010 Hb_007263_010 Hb_007263_010 Hb_000392_450--Hb_007263_010 Hb_000392_450--Hb_002027_320 Hb_000392_450--Hb_003874_010 Hb_000392_450--Hb_007217_010 Hb_000392_450--Hb_000212_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28782 4.0271 65.4038 17.3329 4.9144 5.51459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46714 7.21815 6.57084 4.25522 30.1568

CAGE analysis