Hb_001386_110

Information

Type -
Description -
Location Contig1386: 164207-164823
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14020g
description hypothetical protein
nr
ID XP_011021196.1
description PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
swissprot
ID Q9FGW0
description Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1
trembl
ID B9N201
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s14020g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_110 0.0 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
2 Hb_000155_160 0.1065262023 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
3 Hb_002609_200 0.1074847508 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000419_020 0.1177103475 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_189216_020 0.1202395342 - - PREDICTED: translin [Jatropha curcas]
6 Hb_001976_040 0.123149235 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
7 Hb_007747_050 0.1233600746 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
8 Hb_000580_020 0.1240368517 - - unnamed protein product [Vitis vinifera]
9 Hb_000310_020 0.1243370728 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
10 Hb_000347_240 0.125429769 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
11 Hb_007827_010 0.1255604591 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
12 Hb_017987_050 0.126159934 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
13 Hb_001279_080 0.1269476991 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
14 Hb_000696_290 0.1278375072 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
15 Hb_000390_300 0.1282270953 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
16 Hb_007928_030 0.12875892 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
17 Hb_000847_060 0.1288340818 - - hypothetical protein [Jatropha curcas]
18 Hb_000136_260 0.1300302627 - - 40S ribosomal protein S5A [Hevea brasiliensis]
19 Hb_001489_090 0.1306190098 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
20 Hb_008494_100 0.1308060351 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_001386_110 Hb_001386_110 Hb_000155_160 Hb_000155_160 Hb_001386_110--Hb_000155_160 Hb_002609_200 Hb_002609_200 Hb_001386_110--Hb_002609_200 Hb_000419_020 Hb_000419_020 Hb_001386_110--Hb_000419_020 Hb_189216_020 Hb_189216_020 Hb_001386_110--Hb_189216_020 Hb_001976_040 Hb_001976_040 Hb_001386_110--Hb_001976_040 Hb_007747_050 Hb_007747_050 Hb_001386_110--Hb_007747_050 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_007827_010 Hb_007827_010 Hb_002609_200--Hb_007827_010 Hb_000566_120 Hb_000566_120 Hb_002609_200--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_002609_200--Hb_001279_080 Hb_000431_070 Hb_000431_070 Hb_002609_200--Hb_000431_070 Hb_011457_050 Hb_011457_050 Hb_002609_200--Hb_011457_050 Hb_001353_010 Hb_001353_010 Hb_002609_200--Hb_001353_010 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_000948_160 Hb_000948_160 Hb_189216_020--Hb_000948_160 Hb_002553_060 Hb_002553_060 Hb_189216_020--Hb_002553_060 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_002994_030 Hb_002994_030 Hb_189216_020--Hb_002994_030 Hb_001946_400 Hb_001946_400 Hb_189216_020--Hb_001946_400 Hb_000465_070 Hb_000465_070 Hb_001976_040--Hb_000465_070 Hb_001976_040--Hb_002609_200 Hb_001976_040--Hb_007827_010 Hb_000035_480 Hb_000035_480 Hb_001976_040--Hb_000035_480 Hb_001489_090 Hb_001489_090 Hb_001976_040--Hb_001489_090 Hb_001910_010 Hb_001910_010 Hb_001976_040--Hb_001910_010 Hb_007747_050--Hb_002811_170 Hb_000735_090 Hb_000735_090 Hb_007747_050--Hb_000735_090 Hb_003494_050 Hb_003494_050 Hb_007747_050--Hb_003494_050 Hb_007747_050--Hb_000085_350 Hb_007747_050--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0993984 0.185813 0.208671 0.330658 0.252786 0.130931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305197 0.639616 0.13973 0.229585 0.309202

CAGE analysis