Hb_001386_120

Information

Type -
Description -
Location Contig1386: 164794-169799
Sequence    

Annotation

kegg
ID pop:POPTR_0001s33770g
description POPTRDRAFT_847263; hypothetical protein
nr
ID XP_012070354.1
description PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
swissprot
ID P0AFR6
description Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1
trembl
ID A0A067LP70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10119 PE=4 SV=1
Gene Ontology
ID GO:0003725
description yrdc domain-containing mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10589: 164894-166749 , PASA_asmbl_10590: 166850-169742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_120 0.0 - - PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
2 Hb_002900_190 0.0780432434 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
3 Hb_004491_010 0.0869225759 - - 60S ribosomal protein L51, putative [Ricinus communis]
4 Hb_001584_330 0.0875196761 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
5 Hb_000638_080 0.0936947335 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
6 Hb_012022_030 0.0940553467 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
7 Hb_001604_010 0.0945727329 - - 14-3-3 protein, putative [Ricinus communis]
8 Hb_126643_020 0.0956371128 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
9 Hb_002150_080 0.0967731359 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
10 Hb_000853_420 0.0975253951 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_002685_170 0.0979255673 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
12 Hb_000445_180 0.0983222513 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
13 Hb_004223_280 0.100957015 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
14 Hb_000720_120 0.1013127458 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
15 Hb_000139_410 0.1014130652 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
16 Hb_002137_020 0.1022995245 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_001811_150 0.103443724 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
18 Hb_001623_420 0.1036301511 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_001404_100 0.1038167 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
20 Hb_000877_060 0.1042942159 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]

Gene co-expression network

sample Hb_001386_120 Hb_001386_120 Hb_002900_190 Hb_002900_190 Hb_001386_120--Hb_002900_190 Hb_004491_010 Hb_004491_010 Hb_001386_120--Hb_004491_010 Hb_001584_330 Hb_001584_330 Hb_001386_120--Hb_001584_330 Hb_000638_080 Hb_000638_080 Hb_001386_120--Hb_000638_080 Hb_012022_030 Hb_012022_030 Hb_001386_120--Hb_012022_030 Hb_001604_010 Hb_001604_010 Hb_001386_120--Hb_001604_010 Hb_001771_140 Hb_001771_140 Hb_002900_190--Hb_001771_140 Hb_015746_010 Hb_015746_010 Hb_002900_190--Hb_015746_010 Hb_002900_190--Hb_001604_010 Hb_010931_120 Hb_010931_120 Hb_002900_190--Hb_010931_120 Hb_002900_190--Hb_012022_030 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080 Hb_001623_420 Hb_001623_420 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_000720_120 Hb_000720_120 Hb_000638_080--Hb_000720_120 Hb_001135_050 Hb_001135_050 Hb_000638_080--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_000638_080--Hb_005539_030 Hb_000169_010 Hb_000169_010 Hb_000638_080--Hb_000169_010 Hb_004048_070 Hb_004048_070 Hb_000638_080--Hb_004048_070 Hb_001221_410 Hb_001221_410 Hb_000638_080--Hb_001221_410 Hb_039946_020 Hb_039946_020 Hb_012022_030--Hb_039946_020 Hb_002137_020 Hb_002137_020 Hb_012022_030--Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_012022_030--Hb_004223_280 Hb_000613_140 Hb_000613_140 Hb_012022_030--Hb_000613_140 Hb_000877_060 Hb_000877_060 Hb_012022_030--Hb_000877_060 Hb_000571_120 Hb_000571_120 Hb_012022_030--Hb_000571_120 Hb_007441_120 Hb_007441_120 Hb_001604_010--Hb_007441_120 Hb_001604_010--Hb_015746_010 Hb_028872_140 Hb_028872_140 Hb_001604_010--Hb_028872_140 Hb_001248_130 Hb_001248_130 Hb_001604_010--Hb_001248_130 Hb_001604_010--Hb_000120_950 Hb_001604_010--Hb_001584_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.732 30.8112 17.0665 6.60058 39.5496 36.8987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.7453 38.9272 42.8382 27.6465 9.07389

CAGE analysis