Hb_001388_020

Information

Type -
Description -
Location Contig1388: 28797-30151
Sequence    

Annotation

kegg
ID rcu:RCOM_0365370
description hypothetical protein
nr
ID XP_012081900.1
description PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
swissprot
ID O80582
description F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2
trembl
ID A0A067K387
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19246 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10606: 29034-29154 , PASA_asmbl_10607: 29820-30039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001388_020 0.0 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
2 Hb_001427_220 0.1159089206 - - hypothetical protein CISIN_1g033375mg [Citrus sinensis]
3 Hb_013786_010 0.1201398658 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_040963_010 0.1243023146 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
5 Hb_148121_030 0.1350241902 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
6 Hb_136546_010 0.135608496 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
7 Hb_107809_010 0.1457751497 - - JHL06P13.14 [Jatropha curcas]
8 Hb_029576_100 0.1461551572 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
9 Hb_007919_030 0.1528743682 - - -
10 Hb_001634_080 0.1551803706 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_063523_010 0.168232296 - - -
12 Hb_002740_170 0.1712517626 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
13 Hb_000417_250 0.1736192908 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
14 Hb_127661_010 0.1779755688 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000108_090 0.1787500218 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
16 Hb_001675_130 0.1788678094 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
17 Hb_033045_010 0.1806492158 - - copine, putative [Ricinus communis]
18 Hb_000261_370 0.1816062919 - - -
19 Hb_000203_060 0.1823197208 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
20 Hb_000501_040 0.183254918 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001388_020 Hb_001388_020 Hb_001427_220 Hb_001427_220 Hb_001388_020--Hb_001427_220 Hb_013786_010 Hb_013786_010 Hb_001388_020--Hb_013786_010 Hb_040963_010 Hb_040963_010 Hb_001388_020--Hb_040963_010 Hb_148121_030 Hb_148121_030 Hb_001388_020--Hb_148121_030 Hb_136546_010 Hb_136546_010 Hb_001388_020--Hb_136546_010 Hb_107809_010 Hb_107809_010 Hb_001388_020--Hb_107809_010 Hb_001427_220--Hb_136546_010 Hb_101034_020 Hb_101034_020 Hb_001427_220--Hb_101034_020 Hb_001427_220--Hb_013786_010 Hb_168509_020 Hb_168509_020 Hb_001427_220--Hb_168509_020 Hb_001427_220--Hb_148121_030 Hb_029576_100 Hb_029576_100 Hb_013786_010--Hb_029576_100 Hb_000417_250 Hb_000417_250 Hb_013786_010--Hb_000417_250 Hb_000261_370 Hb_000261_370 Hb_013786_010--Hb_000261_370 Hb_013786_010--Hb_168509_020 Hb_127661_010 Hb_127661_010 Hb_013786_010--Hb_127661_010 Hb_040963_010--Hb_148121_030 Hb_000149_120 Hb_000149_120 Hb_040963_010--Hb_000149_120 Hb_005618_110 Hb_005618_110 Hb_040963_010--Hb_005618_110 Hb_002928_220 Hb_002928_220 Hb_040963_010--Hb_002928_220 Hb_002740_170 Hb_002740_170 Hb_040963_010--Hb_002740_170 Hb_120268_010 Hb_120268_010 Hb_148121_030--Hb_120268_010 Hb_148121_030--Hb_005618_110 Hb_000203_060 Hb_000203_060 Hb_148121_030--Hb_000203_060 Hb_148121_030--Hb_002740_170 Hb_002811_330 Hb_002811_330 Hb_136546_010--Hb_002811_330 Hb_136546_010--Hb_040963_010 Hb_136546_010--Hb_148121_030 Hb_079158_010 Hb_079158_010 Hb_136546_010--Hb_079158_010 Hb_005542_040 Hb_005542_040 Hb_107809_010--Hb_005542_040 Hb_001634_080 Hb_001634_080 Hb_107809_010--Hb_001634_080 Hb_008783_020 Hb_008783_020 Hb_107809_010--Hb_008783_020 Hb_000108_090 Hb_000108_090 Hb_107809_010--Hb_000108_090 Hb_005276_220 Hb_005276_220 Hb_107809_010--Hb_005276_220 Hb_000521_360 Hb_000521_360 Hb_107809_010--Hb_000521_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07675 0.591089 0.047348 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.09406 0.673422

CAGE analysis