Hb_001388_050

Information

Type -
Description -
Location Contig1388: 116943-125788
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10609: 125721-125874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001388_050 0.0 - - -
2 Hb_001811_020 0.1267629923 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000099_200 0.1280715004 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001677_110 0.1354404872 - - Protein YIPF1, putative [Ricinus communis]
5 Hb_000029_020 0.1395817043 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_001357_080 0.1465967443 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
7 Hb_001437_230 0.1576004689 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
8 Hb_131864_040 0.1577037022 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
9 Hb_002028_130 0.1592400419 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
10 Hb_023292_010 0.1592479148 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_002716_070 0.1592809811 - - PREDICTED: protein ABIL2 [Jatropha curcas]
12 Hb_010638_020 0.1597812588 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
13 Hb_183086_060 0.1625262301 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
14 Hb_003209_020 0.1625283237 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
15 Hb_000363_160 0.1625439984 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
16 Hb_001258_080 0.1640422736 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
17 Hb_000427_030 0.1649994621 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002835_410 0.1652982759 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
19 Hb_004976_030 0.1653947833 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
20 Hb_000115_330 0.1662822828 - - altered response to gravity (arg1), plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_001388_050 Hb_001388_050 Hb_001811_020 Hb_001811_020 Hb_001388_050--Hb_001811_020 Hb_000099_200 Hb_000099_200 Hb_001388_050--Hb_000099_200 Hb_001677_110 Hb_001677_110 Hb_001388_050--Hb_001677_110 Hb_000029_020 Hb_000029_020 Hb_001388_050--Hb_000029_020 Hb_001357_080 Hb_001357_080 Hb_001388_050--Hb_001357_080 Hb_001437_230 Hb_001437_230 Hb_001388_050--Hb_001437_230 Hb_001811_020--Hb_000099_200 Hb_001811_020--Hb_000029_020 Hb_000205_270 Hb_000205_270 Hb_001811_020--Hb_000205_270 Hb_000115_330 Hb_000115_330 Hb_001811_020--Hb_000115_330 Hb_001258_080 Hb_001258_080 Hb_001811_020--Hb_001258_080 Hb_183086_060 Hb_183086_060 Hb_001811_020--Hb_183086_060 Hb_000099_200--Hb_000029_020 Hb_000186_240 Hb_000186_240 Hb_000099_200--Hb_000186_240 Hb_010638_020 Hb_010638_020 Hb_000099_200--Hb_010638_020 Hb_006693_030 Hb_006693_030 Hb_000099_200--Hb_006693_030 Hb_000099_200--Hb_000115_330 Hb_026988_020 Hb_026988_020 Hb_001677_110--Hb_026988_020 Hb_002352_010 Hb_002352_010 Hb_001677_110--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_001677_110--Hb_001473_130 Hb_000001_050 Hb_000001_050 Hb_001677_110--Hb_000001_050 Hb_008311_010 Hb_008311_010 Hb_001677_110--Hb_008311_010 Hb_002716_070 Hb_002716_070 Hb_001677_110--Hb_002716_070 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_002687_110 Hb_002687_110 Hb_000029_020--Hb_002687_110 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_002539_090 Hb_002539_090 Hb_001357_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001357_080--Hb_000046_110 Hb_010436_060 Hb_010436_060 Hb_001357_080--Hb_010436_060 Hb_000751_130 Hb_000751_130 Hb_001357_080--Hb_000751_130 Hb_006641_010 Hb_006641_010 Hb_001357_080--Hb_006641_010 Hb_029866_070 Hb_029866_070 Hb_001357_080--Hb_029866_070 Hb_000787_140 Hb_000787_140 Hb_001437_230--Hb_000787_140 Hb_000172_030 Hb_000172_030 Hb_001437_230--Hb_000172_030 Hb_003927_130 Hb_003927_130 Hb_001437_230--Hb_003927_130 Hb_001437_230--Hb_000751_130 Hb_000085_320 Hb_000085_320 Hb_001437_230--Hb_000085_320 Hb_001437_230--Hb_001258_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.444478 0.267703 0.0455765 0.70617 1.91913 2.00801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81921 1.73552 2.77828 0.381273 0.383363

CAGE analysis