Hb_001390_010

Information

Type -
Description -
Location Contig1390: 34853-36805
Sequence    

Annotation

kegg
ID tcc:TCM_006356
description Uncharacterized protein isoform 1
nr
ID XP_012074540.1
description PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09889 PE=4 SV=1
Gene Ontology
ID GO:0005783
description dna-directed rna polymerase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10686: 34871-36763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001390_010 0.0 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
2 Hb_030627_040 0.1270610902 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
3 Hb_000037_110 0.1386083518 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
4 Hb_005527_030 0.1646304754 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
5 Hb_000749_110 0.169921818 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
6 Hb_000207_190 0.1744327733 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
7 Hb_004635_080 0.1788116577 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000768_190 0.1795972378 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
9 Hb_002044_050 0.1797737844 - - -
10 Hb_000206_120 0.1800872974 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
11 Hb_000040_050 0.180100023 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
12 Hb_000264_010 0.1802610008 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
13 Hb_001584_370 0.1829090835 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
14 Hb_003436_050 0.1830236497 - - arf gtpase-activating protein, putative [Ricinus communis]
15 Hb_004324_240 0.1831648717 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
16 Hb_006882_010 0.1836132864 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
17 Hb_002518_300 0.1862083297 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
18 Hb_000029_320 0.1862384016 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
19 Hb_000261_520 0.1863515575 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
20 Hb_008147_050 0.1864190205 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]

Gene co-expression network

sample Hb_001390_010 Hb_001390_010 Hb_030627_040 Hb_030627_040 Hb_001390_010--Hb_030627_040 Hb_000037_110 Hb_000037_110 Hb_001390_010--Hb_000037_110 Hb_005527_030 Hb_005527_030 Hb_001390_010--Hb_005527_030 Hb_000749_110 Hb_000749_110 Hb_001390_010--Hb_000749_110 Hb_000207_190 Hb_000207_190 Hb_001390_010--Hb_000207_190 Hb_004635_080 Hb_004635_080 Hb_001390_010--Hb_004635_080 Hb_000040_050 Hb_000040_050 Hb_030627_040--Hb_000040_050 Hb_006882_010 Hb_006882_010 Hb_030627_040--Hb_006882_010 Hb_002159_030 Hb_002159_030 Hb_030627_040--Hb_002159_030 Hb_005460_030 Hb_005460_030 Hb_030627_040--Hb_005460_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_000768_190 Hb_000768_190 Hb_000037_110--Hb_000768_190 Hb_000021_040 Hb_000021_040 Hb_000037_110--Hb_000021_040 Hb_008595_010 Hb_008595_010 Hb_000037_110--Hb_008595_010 Hb_022250_110 Hb_022250_110 Hb_000037_110--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070 Hb_005527_030--Hb_008595_010 Hb_000347_570 Hb_000347_570 Hb_005527_030--Hb_000347_570 Hb_000170_190 Hb_000170_190 Hb_005527_030--Hb_000170_190 Hb_011512_060 Hb_011512_060 Hb_005527_030--Hb_011512_060 Hb_005527_030--Hb_000037_110 Hb_000010_180 Hb_000010_180 Hb_005527_030--Hb_000010_180 Hb_000749_110--Hb_000037_110 Hb_006483_010 Hb_006483_010 Hb_000749_110--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_000749_110--Hb_000366_190 Hb_000755_080 Hb_000755_080 Hb_000749_110--Hb_000755_080 Hb_000261_520 Hb_000261_520 Hb_000749_110--Hb_000261_520 Hb_002044_050 Hb_002044_050 Hb_000749_110--Hb_002044_050 Hb_003430_090 Hb_003430_090 Hb_000207_190--Hb_003430_090 Hb_002750_050 Hb_002750_050 Hb_000207_190--Hb_002750_050 Hb_000853_260 Hb_000853_260 Hb_000207_190--Hb_000853_260 Hb_001584_370 Hb_001584_370 Hb_000207_190--Hb_001584_370 Hb_000392_370 Hb_000392_370 Hb_000207_190--Hb_000392_370 Hb_002805_060 Hb_002805_060 Hb_000207_190--Hb_002805_060 Hb_000422_140 Hb_000422_140 Hb_004635_080--Hb_000422_140 Hb_028707_090 Hb_028707_090 Hb_004635_080--Hb_028707_090 Hb_000365_140 Hb_000365_140 Hb_004635_080--Hb_000365_140 Hb_028390_010 Hb_028390_010 Hb_004635_080--Hb_028390_010 Hb_004635_080--Hb_008595_010 Hb_002477_130 Hb_002477_130 Hb_004635_080--Hb_002477_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7207 12.5915 7.92284 23.8783 71.484 44.6463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88171 6.34312 10.704 6.37001 29.1231

CAGE analysis