Hb_001390_100

Information

Type -
Description -
Location Contig1390: 101040-106810
Sequence    

Annotation

kegg
ID rcu:RCOM_1381600
description Transaminase mtnE, putative (EC:2.6.1.1)
nr
ID XP_012074529.1
description PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
swissprot
ID Q93ZN9
description LL-diaminopimelate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=DAP PE=1 SV=1
trembl
ID A0A067KLN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09880 PE=3 SV=1
Gene Ontology
ID GO:0009570
description ll-diaminopimelate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10697: 101060-106711
cDNA
(Sanger)
(ID:Location)		 033_D16.ab1: 103220-106711

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001390_100 0.0 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
2 Hb_101334_020 0.0691468057 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
3 Hb_000116_250 0.0818941524 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
4 Hb_025194_090 0.0933322444 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
5 Hb_000094_100 0.096048065 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
6 Hb_000496_130 0.0971545481 - - PREDICTED: fructokinase-1 [Jatropha curcas]
7 Hb_138585_030 0.0974219869 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
8 Hb_005665_090 0.0986242272 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
9 Hb_002627_040 0.098958343 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
10 Hb_001587_040 0.1014702004 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
11 Hb_001009_140 0.1033903655 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
12 Hb_003752_090 0.1043551927 - - chitinase, putative [Ricinus communis]
13 Hb_009288_040 0.1048699341 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
14 Hb_002075_030 0.1062842208 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
15 Hb_000579_040 0.1072845578 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
16 Hb_032631_070 0.109573792 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
17 Hb_007217_010 0.1096998298 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
18 Hb_000331_570 0.1111631321 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
19 Hb_000025_540 0.1122518516 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
20 Hb_070624_010 0.1126746482 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_001390_100 Hb_001390_100 Hb_101334_020 Hb_101334_020 Hb_001390_100--Hb_101334_020 Hb_000116_250 Hb_000116_250 Hb_001390_100--Hb_000116_250 Hb_025194_090 Hb_025194_090 Hb_001390_100--Hb_025194_090 Hb_000094_100 Hb_000094_100 Hb_001390_100--Hb_000094_100 Hb_000496_130 Hb_000496_130 Hb_001390_100--Hb_000496_130 Hb_138585_030 Hb_138585_030 Hb_001390_100--Hb_138585_030 Hb_000230_530 Hb_000230_530 Hb_101334_020--Hb_000230_530 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_017193_010 Hb_017193_010 Hb_101334_020--Hb_017193_010 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_000116_250--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_000116_250--Hb_000585_110 Hb_003355_010 Hb_003355_010 Hb_000116_250--Hb_003355_010 Hb_003440_020 Hb_003440_020 Hb_000116_250--Hb_003440_020 Hb_000007_090 Hb_000007_090 Hb_000116_250--Hb_000007_090 Hb_000579_040 Hb_000579_040 Hb_025194_090--Hb_000579_040 Hb_003029_020 Hb_003029_020 Hb_025194_090--Hb_003029_020 Hb_004502_010 Hb_004502_010 Hb_025194_090--Hb_004502_010 Hb_004629_030 Hb_004629_030 Hb_025194_090--Hb_004629_030 Hb_002928_030 Hb_002928_030 Hb_025194_090--Hb_002928_030 Hb_025194_090--Hb_000496_130 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_012779_080 Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_000094_100--Hb_138585_030 Hb_000496_130--Hb_003355_010 Hb_001143_100 Hb_001143_100 Hb_000496_130--Hb_001143_100 Hb_007943_150 Hb_007943_150 Hb_000496_130--Hb_007943_150 Hb_004710_020 Hb_004710_020 Hb_000496_130--Hb_004710_020 Hb_000510_190 Hb_000510_190 Hb_000496_130--Hb_000510_190 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_138585_030--Hb_000579_040 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65515 6.15577 29.3407 11.9208 3.12815 4.12957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.35436 5.72499 4.98735 10.9656 25.0893

CAGE analysis