Hb_001391_020

Information

Type -
Description -
Location Contig1391: 14960-18561
Sequence    

Annotation

kegg
ID rcu:RCOM_1045410
description Arylacetamide deacetylase, putative
nr
ID XP_002523490.1
description Arylacetamide deacetylase, putative [Ricinus communis]
swissprot
ID Q9LT10
description Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1
trembl
ID B9SBX1
description Arylacetamide deacetylase, putative OS=Ricinus communis GN=RCOM_1045410 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10705: 15986-17001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001391_020 0.0 - - Arylacetamide deacetylase, putative [Ricinus communis]
2 Hb_006018_030 0.1689760691 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
3 Hb_185830_010 0.1826926995 - - PREDICTED: pathogenesis-related protein PR-1 [Jatropha curcas]
4 Hb_075449_050 0.2034328584 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
5 Hb_001671_060 0.2176610455 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
6 Hb_001780_070 0.2208408558 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
7 Hb_000107_070 0.2257956831 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
8 Hb_005396_040 0.2277942544 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_023214_010 0.2293979427 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
10 Hb_026428_010 0.2547891508 - - copper transport protein ATOX1 [Hevea brasiliensis]
11 Hb_003207_110 0.2564060953 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
12 Hb_002836_080 0.258682209 - - -
13 Hb_000175_610 0.2634363024 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
14 Hb_048937_030 0.264138146 - - hypothetical protein RCOM_0231790 [Ricinus communis]
15 Hb_000920_150 0.2662185034 - - annexin [Manihot esculenta]
16 Hb_002243_080 0.2709454362 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
17 Hb_001157_220 0.2718928568 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001741_090 0.2721393368 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
19 Hb_002000_110 0.2721639895 - - ASR-like protein 2 [Hevea brasiliensis]
20 Hb_001035_040 0.2739293867 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001391_020 Hb_001391_020 Hb_006018_030 Hb_006018_030 Hb_001391_020--Hb_006018_030 Hb_185830_010 Hb_185830_010 Hb_001391_020--Hb_185830_010 Hb_075449_050 Hb_075449_050 Hb_001391_020--Hb_075449_050 Hb_001671_060 Hb_001671_060 Hb_001391_020--Hb_001671_060 Hb_001780_070 Hb_001780_070 Hb_001391_020--Hb_001780_070 Hb_000107_070 Hb_000107_070 Hb_001391_020--Hb_000107_070 Hb_006018_030--Hb_075449_050 Hb_048937_030 Hb_048937_030 Hb_006018_030--Hb_048937_030 Hb_006018_030--Hb_000107_070 Hb_001638_210 Hb_001638_210 Hb_006018_030--Hb_001638_210 Hb_006018_030--Hb_001671_060 Hb_001157_220 Hb_001157_220 Hb_185830_010--Hb_001157_220 Hb_185830_010--Hb_006018_030 Hb_185830_010--Hb_001671_060 Hb_000614_100 Hb_000614_100 Hb_185830_010--Hb_000614_100 Hb_185830_010--Hb_001780_070 Hb_002000_110 Hb_002000_110 Hb_075449_050--Hb_002000_110 Hb_075449_050--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_075449_050--Hb_001741_090 Hb_000250_010 Hb_000250_010 Hb_001671_060--Hb_000250_010 Hb_001671_060--Hb_000107_070 Hb_007120_070 Hb_007120_070 Hb_001671_060--Hb_007120_070 Hb_000803_050 Hb_000803_050 Hb_001671_060--Hb_000803_050 Hb_001671_060--Hb_001157_220 Hb_000178_110 Hb_000178_110 Hb_001671_060--Hb_000178_110 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_003286_020 Hb_003286_020 Hb_001780_070--Hb_003286_020 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001780_070--Hb_001741_090 Hb_001780_070--Hb_075449_050 Hb_001780_070--Hb_000107_070 Hb_000107_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_000107_070--Hb_001035_040 Hb_000107_070--Hb_002000_110 Hb_000107_070--Hb_001741_090 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1656 0.135184 0.10598 1.32169 0.693218 0.108328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3562 3.15552 8.4047 0.116572 0

CAGE analysis