Hb_001391_100

Information

Type -
Description -
Location Contig1391: 125785-127452
Sequence    

Annotation

kegg
ID rcu:RCOM_1328840
description AMP dependent ligase, putative (EC:6.2.1.26)
nr
ID XP_002521743.1
description AMP dependent ligase, putative [Ricinus communis]
swissprot
ID Q9FFE6
description Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1
trembl
ID B9S6X4
description AMP dependent ligase, putative OS=Ricinus communis GN=RCOM_1328840 PE=4 SV=1
Gene Ontology
ID GO:0008756
description probable acyl-activating enzyme 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 009_B11.ab1: 126748-127523 , 025_E03.ab1: 126736-127523 , 052_C15.ab1: 126757-127523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001391_100 0.0 - - AMP dependent ligase, putative [Ricinus communis]
2 Hb_062229_010 0.0632406433 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_061908_020 0.116910662 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_000197_230 0.127275719 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
5 Hb_000261_320 0.1288746801 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_002003_040 0.1318981742 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
7 Hb_004605_020 0.132403457 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
8 Hb_000100_210 0.1417106381 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
9 Hb_002833_020 0.1454962549 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_155150_010 0.1468937261 - - kinase, putative [Ricinus communis]
11 Hb_001071_060 0.1511016896 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
12 Hb_002671_060 0.1519998412 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
13 Hb_029748_020 0.1525591313 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_010605_010 0.1530470525 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
15 Hb_043939_010 0.1540626526 - - hypothetical protein B456_N011100 [Gossypium raimondii]
16 Hb_000369_070 0.155404883 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
17 Hb_001522_040 0.1584450935 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_004864_020 0.1616792258 - - Polyprotein, putative [Solanum demissum]
19 Hb_002006_060 0.1616834147 - - PREDICTED: oleosin 1-like [Jatropha curcas]
20 Hb_000997_340 0.164498664 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001391_100 Hb_001391_100 Hb_062229_010 Hb_062229_010 Hb_001391_100--Hb_062229_010 Hb_061908_020 Hb_061908_020 Hb_001391_100--Hb_061908_020 Hb_000197_230 Hb_000197_230 Hb_001391_100--Hb_000197_230 Hb_000261_320 Hb_000261_320 Hb_001391_100--Hb_000261_320 Hb_002003_040 Hb_002003_040 Hb_001391_100--Hb_002003_040 Hb_004605_020 Hb_004605_020 Hb_001391_100--Hb_004605_020 Hb_062229_010--Hb_061908_020 Hb_062229_010--Hb_004605_020 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_062229_010--Hb_000197_230 Hb_010261_030 Hb_010261_030 Hb_062229_010--Hb_010261_030 Hb_061908_020--Hb_004605_020 Hb_172676_010 Hb_172676_010 Hb_061908_020--Hb_172676_010 Hb_027337_030 Hb_027337_030 Hb_061908_020--Hb_027337_030 Hb_006618_020 Hb_006618_020 Hb_061908_020--Hb_006618_020 Hb_001071_060 Hb_001071_060 Hb_000197_230--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_000197_230--Hb_001832_210 Hb_010605_010 Hb_010605_010 Hb_000197_230--Hb_010605_010 Hb_002833_020 Hb_002833_020 Hb_000197_230--Hb_002833_020 Hb_000100_210 Hb_000100_210 Hb_000197_230--Hb_000100_210 Hb_000261_320--Hb_002003_040 Hb_000261_320--Hb_002833_020 Hb_005880_010 Hb_005880_010 Hb_000261_320--Hb_005880_010 Hb_073973_020 Hb_073973_020 Hb_000261_320--Hb_073973_020 Hb_001268_300 Hb_001268_300 Hb_000261_320--Hb_001268_300 Hb_002420_010 Hb_002420_010 Hb_002003_040--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_002003_040--Hb_002671_060 Hb_002003_040--Hb_002833_020 Hb_082683_010 Hb_082683_010 Hb_002003_040--Hb_082683_010 Hb_001008_110 Hb_001008_110 Hb_002003_040--Hb_001008_110 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.9005 91.6661 25.3212 48.3402 1.13787 12.2019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.276622 0.108819 0.738826 48.0878 52.2132

CAGE analysis