Hb_001393_010

Information

Type -
Description -
Location Contig1393: 26076-28263
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06150g
description hypothetical protein
nr
ID XP_006371912.1
description hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
swissprot
ID Q9LHF1
description Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=2 SV=1
trembl
ID U5FHF4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06150g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001393_010 0.0 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
2 Hb_001178_030 0.1110912972 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
3 Hb_001279_040 0.1178686606 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
4 Hb_008226_030 0.1216408763 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
5 Hb_000806_030 0.1309152851 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
6 Hb_034585_010 0.1322418191 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
7 Hb_000367_020 0.1328183917 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
8 Hb_000069_610 0.1331368518 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
9 Hb_012053_090 0.1339652005 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
10 Hb_003408_060 0.134617046 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
11 Hb_004162_190 0.1375326195 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
12 Hb_007735_060 0.1426101229 - - PPase [Hevea brasiliensis]
13 Hb_088584_010 0.1460858865 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
14 Hb_003687_130 0.1467454103 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
15 Hb_001638_330 0.1468760857 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
16 Hb_021079_020 0.1470535449 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
17 Hb_003682_070 0.1471247326 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
18 Hb_000008_280 0.1478206994 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
19 Hb_004994_350 0.1481826618 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
20 Hb_002328_040 0.149677571 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001393_010 Hb_001393_010 Hb_001178_030 Hb_001178_030 Hb_001393_010--Hb_001178_030 Hb_001279_040 Hb_001279_040 Hb_001393_010--Hb_001279_040 Hb_008226_030 Hb_008226_030 Hb_001393_010--Hb_008226_030 Hb_000806_030 Hb_000806_030 Hb_001393_010--Hb_000806_030 Hb_034585_010 Hb_034585_010 Hb_001393_010--Hb_034585_010 Hb_000367_020 Hb_000367_020 Hb_001393_010--Hb_000367_020 Hb_111552_010 Hb_111552_010 Hb_001178_030--Hb_111552_010 Hb_000586_020 Hb_000586_020 Hb_001178_030--Hb_000586_020 Hb_005305_130 Hb_005305_130 Hb_001178_030--Hb_005305_130 Hb_001178_030--Hb_000806_030 Hb_002249_030 Hb_002249_030 Hb_001178_030--Hb_002249_030 Hb_000404_030 Hb_000404_030 Hb_001178_030--Hb_000404_030 Hb_001279_040--Hb_000806_030 Hb_000181_340 Hb_000181_340 Hb_001279_040--Hb_000181_340 Hb_000193_330 Hb_000193_330 Hb_001279_040--Hb_000193_330 Hb_003918_030 Hb_003918_030 Hb_001279_040--Hb_003918_030 Hb_005214_140 Hb_005214_140 Hb_001279_040--Hb_005214_140 Hb_001563_010 Hb_001563_010 Hb_001279_040--Hb_001563_010 Hb_003408_060 Hb_003408_060 Hb_008226_030--Hb_003408_060 Hb_005489_070 Hb_005489_070 Hb_008226_030--Hb_005489_070 Hb_007735_060 Hb_007735_060 Hb_008226_030--Hb_007735_060 Hb_008226_030--Hb_001178_030 Hb_008226_030--Hb_000367_020 Hb_004659_090 Hb_004659_090 Hb_000806_030--Hb_004659_090 Hb_002056_100 Hb_002056_100 Hb_000806_030--Hb_002056_100 Hb_000645_130 Hb_000645_130 Hb_000806_030--Hb_000645_130 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000806_030--Hb_003929_210 Hb_000291_150 Hb_000291_150 Hb_034585_010--Hb_000291_150 Hb_002289_060 Hb_002289_060 Hb_034585_010--Hb_002289_060 Hb_000465_280 Hb_000465_280 Hb_034585_010--Hb_000465_280 Hb_001329_250 Hb_001329_250 Hb_034585_010--Hb_001329_250 Hb_034585_010--Hb_001279_040 Hb_001029_040 Hb_001029_040 Hb_034585_010--Hb_001029_040 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_001951_100 Hb_001951_100 Hb_000367_020--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.0974 102.052 68.2752 74.1043 42.3388 24.9203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8477 15.302 69.7039 23.9643 132.762

CAGE analysis