Hb_001396_030

Information

Type -
Description -
Location Contig1396: 23448-24197
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13520g
description POPTRDRAFT_548052; hypothetical protein
nr
ID XP_002297853.1
description hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GMN7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13520g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10736: 23786-24185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_030 0.0 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
2 Hb_085962_010 0.0443227352 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
3 Hb_027506_030 0.0581540165 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
4 Hb_000112_080 0.0596722381 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
5 Hb_007218_040 0.0744045794 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
6 Hb_000303_060 0.0763518702 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_005542_120 0.0824937606 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
8 Hb_001140_300 0.0912642725 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
9 Hb_007811_020 0.0940209293 - - PREDICTED: expansin-A6 [Jatropha curcas]
10 Hb_011918_070 0.0941613283 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_015048_020 0.0978948713 - - PREDICTED: myb-like protein D [Jatropha curcas]
12 Hb_010264_020 0.0979873475 - - unnamed protein product [Vitis vinifera]
13 Hb_032572_010 0.0981041086 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
14 Hb_005181_170 0.0982140636 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
15 Hb_002272_120 0.1000963529 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_009767_060 0.1009188585 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
17 Hb_004804_010 0.101643486 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
18 Hb_001287_090 0.1031253651 - - Endoglucanase 4 [Aegilops tauschii]
19 Hb_000392_110 0.1037963574 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_000996_030 0.1078705896 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_030 Hb_001396_030 Hb_085962_010 Hb_085962_010 Hb_001396_030--Hb_085962_010 Hb_027506_030 Hb_027506_030 Hb_001396_030--Hb_027506_030 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_000303_060 Hb_000303_060 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_085962_010--Hb_027506_030 Hb_085962_010--Hb_000303_060 Hb_004804_010 Hb_004804_010 Hb_085962_010--Hb_004804_010 Hb_010264_020 Hb_010264_020 Hb_085962_010--Hb_010264_020 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_027506_030--Hb_004804_010 Hb_027506_030--Hb_010264_020 Hb_027506_030--Hb_000303_060 Hb_032572_010 Hb_032572_010 Hb_027506_030--Hb_032572_010 Hb_005181_170 Hb_005181_170 Hb_000112_080--Hb_005181_170 Hb_000112_080--Hb_007218_040 Hb_015048_020 Hb_015048_020 Hb_000112_080--Hb_015048_020 Hb_001140_300 Hb_001140_300 Hb_000112_080--Hb_001140_300 Hb_000003_750 Hb_000003_750 Hb_000112_080--Hb_000003_750 Hb_007218_040--Hb_001140_300 Hb_168918_010 Hb_168918_010 Hb_007218_040--Hb_168918_010 Hb_007811_020 Hb_007811_020 Hb_007218_040--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007218_040--Hb_004435_020 Hb_000303_060--Hb_010264_020 Hb_009767_060 Hb_009767_060 Hb_000303_060--Hb_009767_060 Hb_000303_060--Hb_004804_010 Hb_001117_050 Hb_001117_050 Hb_005542_120--Hb_001117_050 Hb_000878_050 Hb_000878_050 Hb_005542_120--Hb_000878_050 Hb_011918_070 Hb_011918_070 Hb_005542_120--Hb_011918_070 Hb_000392_110 Hb_000392_110 Hb_005542_120--Hb_000392_110 Hb_000003_280 Hb_000003_280 Hb_005542_120--Hb_000003_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.489001 4.58633 7.22362 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.03285 3.4607

CAGE analysis