Hb_001396_060

Information

Type -
Description -
Location Contig1396: 34811-35687
Sequence    

Annotation

kegg
ID rcu:RCOM_1079240
description hypothetical protein
nr
ID XP_002514882.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10738: 34349-35239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000019_090 0.0376745926 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
3 Hb_057597_020 0.0425609456 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
4 Hb_001829_030 0.072590263 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
5 Hb_008147_110 0.1183952059 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
6 Hb_105478_010 0.1395959449 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
7 Hb_183612_020 0.2013798211 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
8 Hb_000172_500 0.2175564036 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003053_040 0.2358094066 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
10 Hb_000006_020 0.2496846744 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000015_240 0.2496846744 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000016_090 0.2496846744 - - -
13 Hb_000016_240 0.2496846744 transcription factor TF Family: LOB hypothetical protein POPTR_0012s13910g [Populus trichocarpa]
14 Hb_000028_020 0.2496846744 - - -
15 Hb_000028_300 0.2496846744 - - hypothetical protein 0_13835_01, partial [Pinus radiata]
16 Hb_000031_310 0.2496846744 transcription factor TF Family: Orphans hypothetical protein [Trichormus azollae]
17 Hb_000037_100 0.2496846744 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000045_030 0.2496846744 - - -
19 Hb_000048_130 0.2496846744 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
20 Hb_000056_050 0.2496846744 - - PREDICTED: uncharacterized protein LOC104117826 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_001396_060 Hb_001396_060 Hb_000019_090 Hb_000019_090 Hb_001396_060--Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_001396_060--Hb_057597_020 Hb_001829_030 Hb_001829_030 Hb_001396_060--Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_001396_060--Hb_008147_110 Hb_105478_010 Hb_105478_010 Hb_001396_060--Hb_105478_010 Hb_183612_020 Hb_183612_020 Hb_001396_060--Hb_183612_020 Hb_000019_090--Hb_057597_020 Hb_000019_090--Hb_001829_030 Hb_000019_090--Hb_008147_110 Hb_000019_090--Hb_105478_010 Hb_000172_500 Hb_000172_500 Hb_000019_090--Hb_000172_500 Hb_057597_020--Hb_001829_030 Hb_057597_020--Hb_008147_110 Hb_057597_020--Hb_105478_010 Hb_057597_020--Hb_000172_500 Hb_001829_030--Hb_008147_110 Hb_001829_030--Hb_105478_010 Hb_003053_040 Hb_003053_040 Hb_001829_030--Hb_003053_040 Hb_008147_110--Hb_105478_010 Hb_008147_110--Hb_003053_040 Hb_003462_130 Hb_003462_130 Hb_008147_110--Hb_003462_130 Hb_105478_010--Hb_003053_040 Hb_105478_010--Hb_003462_130 Hb_005357_190 Hb_005357_190 Hb_105478_010--Hb_005357_190 Hb_001217_030 Hb_001217_030 Hb_105478_010--Hb_001217_030 Hb_000574_520 Hb_000574_520 Hb_183612_020--Hb_000574_520 Hb_002450_150 Hb_002450_150 Hb_183612_020--Hb_002450_150 Hb_007416_380 Hb_007416_380 Hb_183612_020--Hb_007416_380 Hb_059295_010 Hb_059295_010 Hb_183612_020--Hb_059295_010 Hb_141199_010 Hb_141199_010 Hb_183612_020--Hb_141199_010 Hb_183612_020--Hb_001829_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.312721 0 0 0.0423327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis