Hb_001396_100

Information

Type -
Description -
Location Contig1396: 63739-69634
Sequence    

Annotation

kegg
ID rcu:RCOM_0012690
description DNA binding protein, putative
nr
ID XP_002531184.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYW5
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0012690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10742: 63772-69638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_100 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001904_090 0.0634389309 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
3 Hb_001191_090 0.0684908845 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
4 Hb_029866_020 0.0686328076 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
5 Hb_000240_090 0.0755343362 - - Rab5 [Hevea brasiliensis]
6 Hb_000181_300 0.0770951523 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
7 Hb_006831_120 0.077776911 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
8 Hb_000680_140 0.0778215126 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
9 Hb_000123_170 0.0782288383 - - Rab3 [Hevea brasiliensis]
10 Hb_143766_010 0.0786831687 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
11 Hb_000668_040 0.079854751 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
12 Hb_000347_410 0.081037679 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
13 Hb_001218_040 0.0824857283 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
14 Hb_027654_050 0.082617008 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
15 Hb_000103_010 0.0826507387 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
16 Hb_001519_030 0.0841287917 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
17 Hb_000340_570 0.0848689965 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
18 Hb_004724_340 0.0857531331 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
19 Hb_001776_160 0.0862348005 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
20 Hb_000364_030 0.0869021068 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001396_100 Hb_001396_100 Hb_001904_090 Hb_001904_090 Hb_001396_100--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_001396_100--Hb_001191_090 Hb_029866_020 Hb_029866_020 Hb_001396_100--Hb_029866_020 Hb_000240_090 Hb_000240_090 Hb_001396_100--Hb_000240_090 Hb_000181_300 Hb_000181_300 Hb_001396_100--Hb_000181_300 Hb_006831_120 Hb_006831_120 Hb_001396_100--Hb_006831_120 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001519_030 Hb_001519_030 Hb_001904_090--Hb_001519_030 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_000347_410 Hb_000347_410 Hb_029866_020--Hb_000347_410 Hb_029866_020--Hb_000240_090 Hb_005731_170 Hb_005731_170 Hb_029866_020--Hb_005731_170 Hb_011953_020 Hb_011953_020 Hb_029866_020--Hb_011953_020 Hb_007943_090 Hb_007943_090 Hb_029866_020--Hb_007943_090 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000240_090--Hb_000347_410 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_000181_300--Hb_003053_030 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3409 7.6415 14.9037 14.82 12.8738 18.0121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.1757 43.8542 40.2125 16.7791 12.1702

CAGE analysis