Hb_001396_110

Information

Type -
Description -
Location Contig1396: 70543-74813
Sequence    

Annotation

kegg
ID rcu:RCOM_1079410
description DNA primase large subunit, putative
nr
ID XP_002514889.1
description DNA primase large subunit, putative [Ricinus communis]
swissprot
ID Q84WJ2
description Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320 PE=2 SV=2
trembl
ID B9RMC0
description DNA primase large subunit, putative OS=Ricinus communis GN=RCOM_1079410 PE=4 SV=1
Gene Ontology
ID GO:0003896
description probable dna primase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10742: 63772-69638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_110 0.0 - - DNA primase large subunit, putative [Ricinus communis]
2 Hb_006643_020 0.1135512054 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
3 Hb_187679_010 0.1145916255 - - -
4 Hb_004450_050 0.1164550658 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
5 Hb_008226_060 0.1167623838 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
6 Hb_000357_110 0.1262573843 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
7 Hb_085972_010 0.1291425138 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
8 Hb_009627_030 0.1297033069 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
9 Hb_003389_040 0.1300650845 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
10 Hb_006117_060 0.1313999811 - - hypothetical protein CARUB_v10024452mg [Capsella rubella]
11 Hb_000025_630 0.1326003928 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
12 Hb_001051_040 0.1329174096 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
13 Hb_172632_120 0.1334963797 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001322_040 0.1339287331 - - -
15 Hb_000783_010 0.1348860812 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_002298_030 0.1365929272 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
17 Hb_006698_040 0.1373580912 - - bHLH1 transcription factor [Hevea brasiliensis]
18 Hb_001473_160 0.1385105338 - - Vesicle-associated membrane protein, putative [Ricinus communis]
19 Hb_005074_030 0.1393698337 - - -
20 Hb_007101_300 0.1398150898 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001396_110 Hb_001396_110 Hb_006643_020 Hb_006643_020 Hb_001396_110--Hb_006643_020 Hb_187679_010 Hb_187679_010 Hb_001396_110--Hb_187679_010 Hb_004450_050 Hb_004450_050 Hb_001396_110--Hb_004450_050 Hb_008226_060 Hb_008226_060 Hb_001396_110--Hb_008226_060 Hb_000357_110 Hb_000357_110 Hb_001396_110--Hb_000357_110 Hb_085972_010 Hb_085972_010 Hb_001396_110--Hb_085972_010 Hb_006060_020 Hb_006060_020 Hb_006643_020--Hb_006060_020 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_001911_040 Hb_001911_040 Hb_006643_020--Hb_001911_040 Hb_006643_020--Hb_085972_010 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_001159_130 Hb_001159_130 Hb_187679_010--Hb_001159_130 Hb_155159_020 Hb_155159_020 Hb_187679_010--Hb_155159_020 Hb_001936_010 Hb_001936_010 Hb_187679_010--Hb_001936_010 Hb_027380_130 Hb_027380_130 Hb_187679_010--Hb_027380_130 Hb_000300_500 Hb_000300_500 Hb_187679_010--Hb_000300_500 Hb_084646_010 Hb_084646_010 Hb_187679_010--Hb_084646_010 Hb_009627_030 Hb_009627_030 Hb_004450_050--Hb_009627_030 Hb_000815_240 Hb_000815_240 Hb_004450_050--Hb_000815_240 Hb_005146_080 Hb_005146_080 Hb_004450_050--Hb_005146_080 Hb_005188_030 Hb_005188_030 Hb_004450_050--Hb_005188_030 Hb_006441_020 Hb_006441_020 Hb_004450_050--Hb_006441_020 Hb_003389_040 Hb_003389_040 Hb_008226_060--Hb_003389_040 Hb_007101_300 Hb_007101_300 Hb_008226_060--Hb_007101_300 Hb_000032_380 Hb_000032_380 Hb_008226_060--Hb_000032_380 Hb_002205_110 Hb_002205_110 Hb_008226_060--Hb_002205_110 Hb_010997_080 Hb_010997_080 Hb_008226_060--Hb_010997_080 Hb_000417_040 Hb_000417_040 Hb_008226_060--Hb_000417_040 Hb_000357_110--Hb_002205_110 Hb_005306_190 Hb_005306_190 Hb_000357_110--Hb_005306_190 Hb_000357_110--Hb_003389_040 Hb_006816_350 Hb_006816_350 Hb_000357_110--Hb_006816_350 Hb_000357_110--Hb_010997_080 Hb_004586_140 Hb_004586_140 Hb_000357_110--Hb_004586_140 Hb_085972_010--Hb_001911_040 Hb_001829_040 Hb_001829_040 Hb_085972_010--Hb_001829_040 Hb_000022_050 Hb_000022_050 Hb_085972_010--Hb_000022_050 Hb_005686_120 Hb_005686_120 Hb_085972_010--Hb_005686_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.274048 0.406781 0.31255 0.664192 0.105372 0.406957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.245143 0.481934 0.350939 0.311362 0.0974162

CAGE analysis