Hb_001396_120

Information

Type transcription factor
Description TF Family: SBP
Location Contig1396: 78765-82728
Sequence    

Annotation

kegg
ID rcu:RCOM_1079430
description hypothetical protein
nr
ID XP_012085714.1
description PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
swissprot
ID Q6YZE8
description Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1
trembl
ID B9RMC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079430 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10745: 78861-82714 , PASA_asmbl_10746: 79190-79523 , PASA_asmbl_10747: 79995-82714 , PASA_asmbl_10748: 80624-80773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_120 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
2 Hb_001519_060 0.1138240455 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
3 Hb_000336_180 0.1207876358 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002965_080 0.1246268009 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
5 Hb_002014_050 0.142554169 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
6 Hb_000009_200 0.1457826622 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
7 Hb_005725_280 0.1459015722 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
8 Hb_002122_030 0.1487202564 - - -
9 Hb_005714_100 0.1500896936 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
10 Hb_001329_080 0.1514275515 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
11 Hb_001294_050 0.1534028349 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
12 Hb_001627_010 0.1540996075 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
13 Hb_001102_090 0.1578104665 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
14 Hb_001621_050 0.1607505775 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
15 Hb_008248_020 0.160895856 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
16 Hb_011930_120 0.163841529 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
17 Hb_007224_010 0.1639398654 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
18 Hb_008112_010 0.1663493385 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
19 Hb_000923_100 0.1683193412 - - chloride channel clc, putative [Ricinus communis]
20 Hb_132840_020 0.1712537651 - - PREDICTED: protein LHY [Jatropha curcas]

Gene co-expression network

sample Hb_001396_120 Hb_001396_120 Hb_001519_060 Hb_001519_060 Hb_001396_120--Hb_001519_060 Hb_000336_180 Hb_000336_180 Hb_001396_120--Hb_000336_180 Hb_002965_080 Hb_002965_080 Hb_001396_120--Hb_002965_080 Hb_002014_050 Hb_002014_050 Hb_001396_120--Hb_002014_050 Hb_000009_200 Hb_000009_200 Hb_001396_120--Hb_000009_200 Hb_005725_280 Hb_005725_280 Hb_001396_120--Hb_005725_280 Hb_007224_010 Hb_007224_010 Hb_001519_060--Hb_007224_010 Hb_001627_010 Hb_001627_010 Hb_001519_060--Hb_001627_010 Hb_001519_060--Hb_002965_080 Hb_001579_070 Hb_001579_070 Hb_001519_060--Hb_001579_070 Hb_002217_190 Hb_002217_190 Hb_001519_060--Hb_002217_190 Hb_000336_180--Hb_005725_280 Hb_001294_050 Hb_001294_050 Hb_000336_180--Hb_001294_050 Hb_001102_090 Hb_001102_090 Hb_000336_180--Hb_001102_090 Hb_132840_020 Hb_132840_020 Hb_000336_180--Hb_132840_020 Hb_000336_180--Hb_007224_010 Hb_002249_170 Hb_002249_170 Hb_002965_080--Hb_002249_170 Hb_011671_110 Hb_011671_110 Hb_002965_080--Hb_011671_110 Hb_002965_080--Hb_007224_010 Hb_002965_080--Hb_000336_180 Hb_002014_050--Hb_001627_010 Hb_007904_290 Hb_007904_290 Hb_002014_050--Hb_007904_290 Hb_002014_050--Hb_001294_050 Hb_002609_290 Hb_002609_290 Hb_002014_050--Hb_002609_290 Hb_000071_090 Hb_000071_090 Hb_002014_050--Hb_000071_090 Hb_000111_390 Hb_000111_390 Hb_002014_050--Hb_000111_390 Hb_005714_100 Hb_005714_100 Hb_000009_200--Hb_005714_100 Hb_008112_010 Hb_008112_010 Hb_000009_200--Hb_008112_010 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000035_050 Hb_000035_050 Hb_000009_200--Hb_000035_050 Hb_056196_060 Hb_056196_060 Hb_000009_200--Hb_056196_060 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_002498_250 Hb_002498_250 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93467 30.2613 28.9021 23.4933 1.92862 1.26911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.40262 2.13318 0.80816 2.9678 9.74965

CAGE analysis