Hb_001396_130

Information

Type -
Description -
Location Contig1396: 87545-87976
Sequence    

Annotation

kegg
ID rcu:RCOM_1079440
description hypothetical protein
nr
ID XP_002514892.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_186765_010 0.0662694493 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
3 Hb_001976_100 0.104654924 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
4 Hb_000377_130 0.1053429933 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
5 Hb_006755_030 0.1064835007 - - BURP domain-containing protein, putative [Theobroma cacao]
6 Hb_044380_010 0.1064925895 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
7 Hb_000207_240 0.1080441141 - - hypothetical protein RCOM_0686540 [Ricinus communis]
8 Hb_001097_140 0.1103003862 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004930_020 0.1189455333 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
10 Hb_011519_040 0.1224994461 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
11 Hb_003714_030 0.1247750262 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_000959_110 0.1255315792 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
13 Hb_019925_020 0.1284357066 - - electron carrier, putative [Ricinus communis]
14 Hb_006351_120 0.1302685696 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
15 Hb_000856_210 0.1302869075 - - nitrate transporter, putative [Ricinus communis]
16 Hb_090390_010 0.130773315 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
17 Hb_125181_010 0.1324563832 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
18 Hb_012077_010 0.1360807391 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
19 Hb_094437_030 0.1366410841 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
20 Hb_008001_030 0.1368653547 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_130 Hb_001396_130 Hb_186765_010 Hb_186765_010 Hb_001396_130--Hb_186765_010 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_000377_130 Hb_000377_130 Hb_001396_130--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_001396_130--Hb_006755_030 Hb_044380_010 Hb_044380_010 Hb_001396_130--Hb_044380_010 Hb_000207_240 Hb_000207_240 Hb_001396_130--Hb_000207_240 Hb_186765_010--Hb_000377_130 Hb_011519_040 Hb_011519_040 Hb_186765_010--Hb_011519_040 Hb_186765_010--Hb_006755_030 Hb_001097_140 Hb_001097_140 Hb_186765_010--Hb_001097_140 Hb_002925_060 Hb_002925_060 Hb_186765_010--Hb_002925_060 Hb_000009_250 Hb_000009_250 Hb_001976_100--Hb_000009_250 Hb_004930_020 Hb_004930_020 Hb_001976_100--Hb_004930_020 Hb_000023_180 Hb_000023_180 Hb_001976_100--Hb_000023_180 Hb_002835_070 Hb_002835_070 Hb_001976_100--Hb_002835_070 Hb_000334_030 Hb_000334_030 Hb_001976_100--Hb_000334_030 Hb_000377_130--Hb_006755_030 Hb_000377_130--Hb_011519_040 Hb_000959_110 Hb_000959_110 Hb_000377_130--Hb_000959_110 Hb_000377_130--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_000377_130--Hb_000620_050 Hb_006755_030--Hb_000959_110 Hb_006755_030--Hb_011519_040 Hb_184074_010 Hb_184074_010 Hb_006755_030--Hb_184074_010 Hb_006755_030--Hb_000334_030 Hb_003714_030 Hb_003714_030 Hb_044380_010--Hb_003714_030 Hb_004530_010 Hb_004530_010 Hb_044380_010--Hb_004530_010 Hb_044380_010--Hb_186765_010 Hb_044380_010--Hb_011519_040 Hb_001248_140 Hb_001248_140 Hb_044380_010--Hb_001248_140 Hb_000856_210 Hb_000856_210 Hb_000207_240--Hb_000856_210 Hb_000207_240--Hb_001097_140 Hb_000207_240--Hb_003714_030 Hb_006351_120 Hb_006351_120 Hb_000207_240--Hb_006351_120 Hb_019925_020 Hb_019925_020 Hb_000207_240--Hb_019925_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.231018 0.0569978 1.42377 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.229401 1.46514

CAGE analysis