Hb_001396_170

Information

Type -
Description -
Location Contig1396: 125548-130153
Sequence    

Annotation

kegg
ID rcu:RCOM_1079660
description hypothetical protein
nr
ID CBI27677.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9RMC5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10753: 127035-130041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_170 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_062585_010 0.1778306469 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
3 Hb_181975_010 0.2021135291 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
4 Hb_000574_150 0.2097524703 - - PREDICTED: protein SRG1-like [Jatropha curcas]
5 Hb_007978_020 0.2147925795 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
6 Hb_023647_040 0.2207103715 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_000003_390 0.2223315648 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
8 Hb_000334_200 0.2564742406 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_001907_100 0.2631743853 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
10 Hb_007257_050 0.2704956976 - - protein with unknown function [Ricinus communis]
11 Hb_007846_040 0.2712848856 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
12 Hb_005504_010 0.2739380539 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
13 Hb_000243_020 0.2752888943 - - -
14 Hb_031089_030 0.2773510791 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
15 Hb_063433_010 0.2776597004 - - Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
16 Hb_000375_370 0.2786852765 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_001396_150 0.279926677 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
18 Hb_000617_040 0.2816925677 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
19 Hb_006615_100 0.2826530129 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
20 Hb_000270_210 0.2847078859 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001396_170 Hb_001396_170 Hb_062585_010 Hb_062585_010 Hb_001396_170--Hb_062585_010 Hb_181975_010 Hb_181975_010 Hb_001396_170--Hb_181975_010 Hb_000574_150 Hb_000574_150 Hb_001396_170--Hb_000574_150 Hb_007978_020 Hb_007978_020 Hb_001396_170--Hb_007978_020 Hb_023647_040 Hb_023647_040 Hb_001396_170--Hb_023647_040 Hb_000003_390 Hb_000003_390 Hb_001396_170--Hb_000003_390 Hb_062585_010--Hb_000003_390 Hb_062585_010--Hb_000574_150 Hb_002804_050 Hb_002804_050 Hb_062585_010--Hb_002804_050 Hb_005504_010 Hb_005504_010 Hb_062585_010--Hb_005504_010 Hb_002735_040 Hb_002735_040 Hb_062585_010--Hb_002735_040 Hb_007257_050 Hb_007257_050 Hb_181975_010--Hb_007257_050 Hb_001907_100 Hb_001907_100 Hb_181975_010--Hb_001907_100 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_181975_010--Hb_007978_020 Hb_001493_010 Hb_001493_010 Hb_181975_010--Hb_001493_010 Hb_000574_150--Hb_007978_020 Hb_000574_150--Hb_181975_010 Hb_000574_150--Hb_000003_390 Hb_000574_150--Hb_007257_050 Hb_007680_020 Hb_007680_020 Hb_000574_150--Hb_007680_020 Hb_041237_010 Hb_041237_010 Hb_007978_020--Hb_041237_010 Hb_000014_130 Hb_000014_130 Hb_007978_020--Hb_000014_130 Hb_000617_040 Hb_000617_040 Hb_007978_020--Hb_000617_040 Hb_003398_010 Hb_003398_010 Hb_007978_020--Hb_003398_010 Hb_023647_040--Hb_181975_010 Hb_001247_230 Hb_001247_230 Hb_023647_040--Hb_001247_230 Hb_001504_190 Hb_001504_190 Hb_023647_040--Hb_001504_190 Hb_001999_250 Hb_001999_250 Hb_023647_040--Hb_001999_250 Hb_002783_050 Hb_002783_050 Hb_023647_040--Hb_002783_050 Hb_000003_390--Hb_007257_050 Hb_003157_010 Hb_003157_010 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2083 22.4753 0.874852 0.99904 2.58982 14.5257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14095 1.1464 0 4.22999 0.301543

CAGE analysis