Hb_001396_180

Information

Type -
Description -
Location Contig1396: 135951-138746
Sequence    

Annotation

kegg
ID pxb:103935112
description uncharacterized LOC103935112
nr
ID XP_012085708.1
description PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17984 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10755: 135911-138668
cDNA
(Sanger)
(ID:Location)		 001_O01.ab1: 136110-136899 , 007_B12.ab1: 135911-136664 , 053_H15.ab1: 135911-138324

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_180 0.0 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
2 Hb_001360_040 0.0682819549 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
3 Hb_003376_040 0.0796487399 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
4 Hb_005539_350 0.0829262664 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001269_680 0.0907210113 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
6 Hb_153112_020 0.0916437184 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
7 Hb_000096_090 0.0931790741 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
8 Hb_003732_020 0.0938362781 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
9 Hb_011224_110 0.0950196081 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
10 Hb_007380_070 0.0956372772 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_000505_010 0.0957331928 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
12 Hb_002368_050 0.0962551195 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000264_240 0.0970112119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_044662_070 0.1000790671 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
15 Hb_000840_030 0.1004760772 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
16 Hb_002874_190 0.1007809913 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
17 Hb_000270_270 0.1015617587 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
18 Hb_003929_160 0.1016239971 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
19 Hb_003376_120 0.1021286117 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
20 Hb_000046_280 0.1030146564 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_180 Hb_001396_180 Hb_001360_040 Hb_001360_040 Hb_001396_180--Hb_001360_040 Hb_003376_040 Hb_003376_040 Hb_001396_180--Hb_003376_040 Hb_005539_350 Hb_005539_350 Hb_001396_180--Hb_005539_350 Hb_001269_680 Hb_001269_680 Hb_001396_180--Hb_001269_680 Hb_153112_020 Hb_153112_020 Hb_001396_180--Hb_153112_020 Hb_000096_090 Hb_000096_090 Hb_001396_180--Hb_000096_090 Hb_003732_020 Hb_003732_020 Hb_001360_040--Hb_003732_020 Hb_000761_020 Hb_000761_020 Hb_001360_040--Hb_000761_020 Hb_001360_040--Hb_003376_040 Hb_002685_140 Hb_002685_140 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_003929_160 Hb_003929_160 Hb_003376_040--Hb_003929_160 Hb_007380_070 Hb_007380_070 Hb_003376_040--Hb_007380_070 Hb_007908_020 Hb_007908_020 Hb_003376_040--Hb_007908_020 Hb_001862_190 Hb_001862_190 Hb_003376_040--Hb_001862_190 Hb_003376_040--Hb_000096_090 Hb_005539_350--Hb_001269_680 Hb_006541_030 Hb_006541_030 Hb_005539_350--Hb_006541_030 Hb_005539_350--Hb_007380_070 Hb_002874_190 Hb_002874_190 Hb_005539_350--Hb_002874_190 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_001269_680--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_001269_680--Hb_003001_120 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_000230_200 Hb_000230_200 Hb_001269_680--Hb_000230_200 Hb_000331_080 Hb_000331_080 Hb_153112_020--Hb_000331_080 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_000096_090--Hb_000648_110 Hb_001053_180 Hb_001053_180 Hb_000096_090--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_000096_090--Hb_000316_050 Hb_000096_090--Hb_003732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.4634 18.958 45.8933 24.7753 64.0429 76.7215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.348 77.0447 95.6992 14.9955 23.0532

CAGE analysis