Hb_001396_190

Information

Type -
Description -
Location Contig1396: 139964-143346
Sequence    

Annotation

kegg
ID cam:101504831
description uncharacterized LOC101504831
nr
ID XP_011020769.1
description PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
swissprot
ID -
description -
trembl
ID M5XAW7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10756: 139798-140304
cDNA
(Sanger)
(ID:Location)		 030_J16.ab1: 142904-143385 , 043_K24.ab1: 139844-140304 , 050_J06.ab1: 139844-140304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_190 0.0 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
2 Hb_003052_040 0.127910068 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000367_280 0.1331768237 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
4 Hb_168501_010 0.1349635911 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_001268_080 0.1360460845 - - catalytic, putative [Ricinus communis]
6 Hb_078633_010 0.1546964843 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
7 Hb_008066_040 0.1599103106 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
8 Hb_011245_020 0.160840934 - - Ferrochelatase [Medicago truncatula]
9 Hb_004048_050 0.1656951934 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
10 Hb_007810_030 0.1667263382 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
11 Hb_001213_120 0.1673867776 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
12 Hb_000077_410 0.1678109763 - - protein with unknown function [Ricinus communis]
13 Hb_012573_030 0.1731221813 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002685_090 0.1732316974 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
15 Hb_054865_130 0.1762938711 - - acyltransferase, putative [Ricinus communis]
16 Hb_005841_040 0.179023317 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
17 Hb_024714_060 0.1808665094 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
18 Hb_006831_030 0.1814337184 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
19 Hb_001006_180 0.18239586 - - PREDICTED: endonuclease V-like [Jatropha curcas]
20 Hb_000742_270 0.1827825807 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001396_190 Hb_001396_190 Hb_003052_040 Hb_003052_040 Hb_001396_190--Hb_003052_040 Hb_000367_280 Hb_000367_280 Hb_001396_190--Hb_000367_280 Hb_168501_010 Hb_168501_010 Hb_001396_190--Hb_168501_010 Hb_001268_080 Hb_001268_080 Hb_001396_190--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_001396_190--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_001396_190--Hb_008066_040 Hb_011671_400 Hb_011671_400 Hb_003052_040--Hb_011671_400 Hb_002260_090 Hb_002260_090 Hb_003052_040--Hb_002260_090 Hb_005914_070 Hb_005914_070 Hb_003052_040--Hb_005914_070 Hb_003052_040--Hb_078633_010 Hb_014497_110 Hb_014497_110 Hb_003052_040--Hb_014497_110 Hb_000367_280--Hb_001268_080 Hb_001213_120 Hb_001213_120 Hb_000367_280--Hb_001213_120 Hb_011245_020 Hb_011245_020 Hb_000367_280--Hb_011245_020 Hb_007810_030 Hb_007810_030 Hb_000367_280--Hb_007810_030 Hb_004297_040 Hb_004297_040 Hb_000367_280--Hb_004297_040 Hb_000367_280--Hb_078633_010 Hb_168501_010--Hb_000367_280 Hb_000809_030 Hb_000809_030 Hb_168501_010--Hb_000809_030 Hb_001935_030 Hb_001935_030 Hb_168501_010--Hb_001935_030 Hb_168501_010--Hb_011245_020 Hb_002045_230 Hb_002045_230 Hb_168501_010--Hb_002045_230 Hb_001268_080--Hb_001213_120 Hb_001268_080--Hb_078633_010 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030 Hb_001268_080--Hb_004297_040 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_005137_020 Hb_005137_020 Hb_078633_010--Hb_005137_020 Hb_078633_010--Hb_001213_120 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_008066_040--Hb_005137_020 Hb_008066_040--Hb_001935_030 Hb_008066_040--Hb_001268_080 Hb_008066_040--Hb_078633_010 Hb_008066_040--Hb_072912_020 Hb_008066_040--Hb_002045_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
191.162 3.78219 5.23895 49.2134 27.2061 106.089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
251.004 429.43 539.776 16.4032 14.4792

CAGE analysis