Hb_001396_200

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig1396: 147676-155581
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13700g
description calmodulin-binding family protein
nr
ID XP_012085704.1
description PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9FYG2
description Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1
trembl
ID A0A067K4T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17982 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-binding transcription activator 4 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10758: 147810-148348 , PASA_asmbl_10759: 150265-155554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_200 0.0 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
2 Hb_000868_090 0.0673129834 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
3 Hb_000130_410 0.0705614079 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
4 Hb_007035_050 0.0745069042 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
5 Hb_008959_020 0.0797693057 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
6 Hb_001114_140 0.0798169825 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
7 Hb_007765_110 0.0805412773 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
8 Hb_000318_250 0.0813389732 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
9 Hb_000028_370 0.0817463973 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
10 Hb_002007_150 0.0819332357 - - -
11 Hb_000732_010 0.0860199688 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
12 Hb_001723_020 0.0861750546 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
13 Hb_001266_100 0.0864963636 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
14 Hb_003370_030 0.0880642396 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
15 Hb_002026_210 0.0892311951 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
16 Hb_000002_340 0.0915114989 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
17 Hb_000003_190 0.0919139076 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
18 Hb_001205_240 0.09271302 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
19 Hb_006520_040 0.0930451373 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
20 Hb_001546_080 0.09322219 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_200 Hb_001396_200 Hb_000868_090 Hb_000868_090 Hb_001396_200--Hb_000868_090 Hb_000130_410 Hb_000130_410 Hb_001396_200--Hb_000130_410 Hb_007035_050 Hb_007035_050 Hb_001396_200--Hb_007035_050 Hb_008959_020 Hb_008959_020 Hb_001396_200--Hb_008959_020 Hb_001114_140 Hb_001114_140 Hb_001396_200--Hb_001114_140 Hb_007765_110 Hb_007765_110 Hb_001396_200--Hb_007765_110 Hb_000868_090--Hb_007765_110 Hb_019863_070 Hb_019863_070 Hb_000868_090--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_000868_090--Hb_002818_030 Hb_003464_090 Hb_003464_090 Hb_000868_090--Hb_003464_090 Hb_000318_250 Hb_000318_250 Hb_000868_090--Hb_000318_250 Hb_003906_200 Hb_003906_200 Hb_000868_090--Hb_003906_200 Hb_000130_410--Hb_000318_250 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_000708_030 Hb_000708_030 Hb_000130_410--Hb_000708_030 Hb_004324_130 Hb_004324_130 Hb_000130_410--Hb_004324_130 Hb_001546_080 Hb_001546_080 Hb_000130_410--Hb_001546_080 Hb_000340_400 Hb_000340_400 Hb_007035_050--Hb_000340_400 Hb_005116_060 Hb_005116_060 Hb_007035_050--Hb_005116_060 Hb_007035_050--Hb_000318_250 Hb_000886_050 Hb_000886_050 Hb_007035_050--Hb_000886_050 Hb_007035_050--Hb_007765_110 Hb_000003_190 Hb_000003_190 Hb_008959_020--Hb_000003_190 Hb_001329_160 Hb_001329_160 Hb_008959_020--Hb_001329_160 Hb_008959_020--Hb_001546_080 Hb_008959_020--Hb_007765_110 Hb_001080_230 Hb_001080_230 Hb_008959_020--Hb_001080_230 Hb_001266_100 Hb_001266_100 Hb_008959_020--Hb_001266_100 Hb_003370_030 Hb_003370_030 Hb_001114_140--Hb_003370_030 Hb_167498_010 Hb_167498_010 Hb_001114_140--Hb_167498_010 Hb_001114_140--Hb_001266_100 Hb_007163_120 Hb_007163_120 Hb_001114_140--Hb_007163_120 Hb_001369_730 Hb_001369_730 Hb_001114_140--Hb_001369_730 Hb_000107_490 Hb_000107_490 Hb_001114_140--Hb_000107_490 Hb_007765_110--Hb_003464_090 Hb_007765_110--Hb_007163_120 Hb_033772_030 Hb_033772_030 Hb_007765_110--Hb_033772_030 Hb_007765_110--Hb_003370_030 Hb_011491_010 Hb_011491_010 Hb_007765_110--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4867 18.8351 7.05697 13.6894 11.9026 9.17689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8665 13.8807 9.24342 14.0688 12.2364

CAGE analysis