Hb_001396_230

Information

Type -
Description -
Location Contig1396: 160621-160986
Sequence    

Annotation

kegg
ID dosa:Os01t0788001-00
description Os01g0788001; Hypothetical gene.
nr
ID EYU45417.1
description hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022RY28
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a023992mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10762: 160365-161026
cDNA
(Sanger)
(ID:Location)		 029_O11r.ab1: 159161-160832

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_230 0.0 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
2 Hb_005779_100 0.0855659803 - - DNAJ [Theobroma cacao]
3 Hb_024952_010 0.0981572411 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
4 Hb_008085_040 0.1027184249 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
5 Hb_002739_110 0.105436113 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
6 Hb_001606_070 0.1074350971 - - fimbrin, putative [Ricinus communis]
7 Hb_003030_080 0.1123414771 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_001959_160 0.118440129 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
9 Hb_001396_220 0.1190833146 - - nuclear transport factor, putative [Ricinus communis]
10 Hb_003497_030 0.1221984166 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_001153_220 0.1239385149 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
12 Hb_002357_040 0.126273124 - - latex-abundant protein [Hevea brasiliensis]
13 Hb_000249_130 0.1279506057 - - hypothetical protein RCOM_0254640 [Ricinus communis]
14 Hb_000805_090 0.1300606821 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
15 Hb_000157_010 0.1305991909 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_001473_130 0.1308014902 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
17 Hb_000983_100 0.1333157509 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
18 Hb_143629_090 0.135186982 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
19 Hb_002154_050 0.1365518038 - - RNA binding protein, putative [Ricinus communis]
20 Hb_000156_100 0.139226402 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_230 Hb_001396_230 Hb_005779_100 Hb_005779_100 Hb_001396_230--Hb_005779_100 Hb_024952_010 Hb_024952_010 Hb_001396_230--Hb_024952_010 Hb_008085_040 Hb_008085_040 Hb_001396_230--Hb_008085_040 Hb_002739_110 Hb_002739_110 Hb_001396_230--Hb_002739_110 Hb_001606_070 Hb_001606_070 Hb_001396_230--Hb_001606_070 Hb_003030_080 Hb_003030_080 Hb_001396_230--Hb_003030_080 Hb_002154_050 Hb_002154_050 Hb_005779_100--Hb_002154_050 Hb_006602_020 Hb_006602_020 Hb_005779_100--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_005779_100--Hb_006602_010 Hb_002357_040 Hb_002357_040 Hb_005779_100--Hb_002357_040 Hb_001473_130 Hb_001473_130 Hb_005779_100--Hb_001473_130 Hb_024952_010--Hb_001606_070 Hb_024952_010--Hb_005779_100 Hb_001153_220 Hb_001153_220 Hb_024952_010--Hb_001153_220 Hb_002352_010 Hb_002352_010 Hb_024952_010--Hb_002352_010 Hb_000861_040 Hb_000861_040 Hb_024952_010--Hb_000861_040 Hb_001959_160 Hb_001959_160 Hb_008085_040--Hb_001959_160 Hb_007229_060 Hb_007229_060 Hb_008085_040--Hb_007229_060 Hb_000223_150 Hb_000223_150 Hb_008085_040--Hb_000223_150 Hb_000156_100 Hb_000156_100 Hb_008085_040--Hb_000156_100 Hb_008085_040--Hb_000861_040 Hb_001004_040 Hb_001004_040 Hb_002739_110--Hb_001004_040 Hb_000380_180 Hb_000380_180 Hb_002739_110--Hb_000380_180 Hb_152439_020 Hb_152439_020 Hb_002739_110--Hb_152439_020 Hb_000249_130 Hb_000249_130 Hb_002739_110--Hb_000249_130 Hb_002739_110--Hb_008085_040 Hb_000849_040 Hb_000849_040 Hb_001606_070--Hb_000849_040 Hb_001606_070--Hb_005779_100 Hb_001606_070--Hb_003030_080 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_001606_070--Hb_000861_040 Hb_003030_080--Hb_000249_130 Hb_003497_030 Hb_003497_030 Hb_003030_080--Hb_003497_030 Hb_003030_080--Hb_000849_040 Hb_003030_080--Hb_005779_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3899.64 750.678 165.144 243.52 2709.03 5930.97
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4583.68 3826.52 10348 1528.91 253.98

CAGE analysis