Hb_001396_250

Information

Type -
Description -
Location Contig1396: 179112-180149
Sequence    

Annotation

kegg
ID fve:101312406
description stress-associated endoplasmic reticulum protein 2-like isoform 1
nr
ID XP_012085698.1
description PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
swissprot
ID Q6TAW2
description Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus GN=Serp2 PE=3 SV=2
trembl
ID I1KS28
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005783
description stress-associated endoplasmic reticulum protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10768: 178712-180434 , PASA_asmbl_10769: 179284-179827
cDNA
(Sanger)
(ID:Location)		 032_N07.ab1: 178719-180345 , 051_O02.ab1: 178713-180312

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_250 0.0 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
2 Hb_000015_070 0.0865252283 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
3 Hb_011214_100 0.1131961311 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
4 Hb_166480_010 0.1198548704 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
5 Hb_012675_080 0.1289622674 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
6 Hb_014050_010 0.1318904208 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
7 Hb_002784_070 0.1371619504 - - BnaUnng01470D [Brassica napus]
8 Hb_000671_120 0.1401049155 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
9 Hb_007763_050 0.1435612869 - - hypothetical protein L484_012752 [Morus notabilis]
10 Hb_010368_030 0.1461237441 - - BnaA07g35570D [Brassica napus]
11 Hb_108227_010 0.1477460147 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
12 Hb_000120_190 0.1498839118 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
13 Hb_132180_010 0.1520063989 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
14 Hb_007188_020 0.1522969499 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
15 Hb_011037_020 0.1526695898 - - unknown [Picea sitchensis]
16 Hb_000086_190 0.1533969294 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
17 Hb_001220_010 0.1559964649 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
18 Hb_000635_070 0.1594814129 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
19 Hb_007545_050 0.1606574246 - - -
20 Hb_002482_060 0.1621806712 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_001396_250 Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_001396_250--Hb_000015_070 Hb_011214_100 Hb_011214_100 Hb_001396_250--Hb_011214_100 Hb_166480_010 Hb_166480_010 Hb_001396_250--Hb_166480_010 Hb_012675_080 Hb_012675_080 Hb_001396_250--Hb_012675_080 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_000015_070--Hb_166480_010 Hb_000015_070--Hb_011214_100 Hb_000015_070--Hb_012675_080 Hb_030982_020 Hb_030982_020 Hb_011214_100--Hb_030982_020 Hb_132180_010 Hb_132180_010 Hb_011214_100--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_011214_100--Hb_002078_260 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160 Hb_002482_060 Hb_002482_060 Hb_166480_010--Hb_002482_060 Hb_000120_190 Hb_000120_190 Hb_166480_010--Hb_000120_190 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_014050_010--Hb_000015_070 Hb_010368_030 Hb_010368_030 Hb_014050_010--Hb_010368_030 Hb_014050_010--Hb_002482_060 Hb_014050_010--Hb_000120_190 Hb_014050_010--Hb_000086_190 Hb_002784_070--Hb_011214_100 Hb_002784_070--Hb_005085_030 Hb_002784_070--Hb_000015_070 Hb_002784_070--Hb_166480_010 Hb_007188_020 Hb_007188_020 Hb_002784_070--Hb_007188_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4863 11.5664 21.036 221.993 13.9331 271.378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.6477 130.235 54.6168 27.9724 7.74763

CAGE analysis