Hb_001396_260

Information

Type -
Description -
Location Contig1396: 180898-187031
Sequence    

Annotation

kegg
ID rcu:RCOM_1079860
description hypothetical protein
nr
ID XP_012085697.1
description PREDICTED: F-box only protein 6 [Jatropha curcas]
swissprot
ID Q9FZK1
description F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1
trembl
ID A0A067K3J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17973 PE=4 SV=1
Gene Ontology
ID GO:0010305
description f-box only protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10770: 180636-180995 , PASA_asmbl_10771: 181166-186898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_260 0.0 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
2 Hb_084429_010 0.0953868636 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
3 Hb_015763_020 0.0987666807 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
4 Hb_004096_080 0.1117736662 - - PREDICTED: IST1 homolog [Jatropha curcas]
5 Hb_031089_030 0.1205961775 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
6 Hb_003157_010 0.1234857735 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
7 Hb_009028_030 0.1273532823 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
8 Hb_002078_420 0.1317942311 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
9 Hb_001989_020 0.1329566567 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
10 Hb_011861_070 0.1335255922 - - F-box/LRR-repeat protein, putative [Ricinus communis]
11 Hb_007257_050 0.1344216935 - - protein with unknown function [Ricinus communis]
12 Hb_010584_010 0.135758173 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
13 Hb_003349_010 0.1374501174 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
14 Hb_148209_020 0.1377307107 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
15 Hb_001301_230 0.1388280878 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
16 Hb_057451_010 0.1388983193 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
17 Hb_000808_070 0.1392424366 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
18 Hb_164010_070 0.1407081203 - - Paramyosin, putative [Ricinus communis]
19 Hb_000375_370 0.1423374432 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_002002_030 0.1433656657 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_001396_260 Hb_001396_260 Hb_084429_010 Hb_084429_010 Hb_001396_260--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_004096_080 Hb_004096_080 Hb_001396_260--Hb_004096_080 Hb_031089_030 Hb_031089_030 Hb_001396_260--Hb_031089_030 Hb_003157_010 Hb_003157_010 Hb_001396_260--Hb_003157_010 Hb_009028_030 Hb_009028_030 Hb_001396_260--Hb_009028_030 Hb_084429_010--Hb_004096_080 Hb_084429_010--Hb_031089_030 Hb_007257_050 Hb_007257_050 Hb_084429_010--Hb_007257_050 Hb_000375_370 Hb_000375_370 Hb_084429_010--Hb_000375_370 Hb_002849_080 Hb_002849_080 Hb_084429_010--Hb_002849_080 Hb_000227_380 Hb_000227_380 Hb_015763_020--Hb_000227_380 Hb_000264_100 Hb_000264_100 Hb_015763_020--Hb_000264_100 Hb_000120_610 Hb_000120_610 Hb_015763_020--Hb_000120_610 Hb_000002_440 Hb_000002_440 Hb_015763_020--Hb_000002_440 Hb_004899_070 Hb_004899_070 Hb_015763_020--Hb_004899_070 Hb_000594_020 Hb_000594_020 Hb_015763_020--Hb_000594_020 Hb_004096_080--Hb_015763_020 Hb_002078_420 Hb_002078_420 Hb_004096_080--Hb_002078_420 Hb_114310_040 Hb_114310_040 Hb_004096_080--Hb_114310_040 Hb_011861_070 Hb_011861_070 Hb_004096_080--Hb_011861_070 Hb_031089_030--Hb_007257_050 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_031089_030--Hb_000375_370 Hb_001247_140 Hb_001247_140 Hb_031089_030--Hb_001247_140 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_006501_020 Hb_006501_020 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.5984 114.687 6.19931 19.2732 101.392 97.4158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.6151 14.226 18.0667 63.5181 7.90296

CAGE analysis