Hb_001396_280

Information

Type transcription factor
Description TF Family: SBP
Location Contig1396: 200626-204949
Sequence    

Annotation

kegg
ID rcu:RCOM_1079880
description LIGULELESS1 protein, putative
nr
ID XP_012085695.1
description PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
swissprot
ID A2YGR5
description Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1
trembl
ID A0A067JVJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17971 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10773: 200622-201046 , PASA_asmbl_10774: 201086-204743 , PASA_asmbl_10775: 204013-204253 , PASA_asmbl_10776: 202955-203120 , PASA_asmbl_10778: 204808-205654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_280 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
2 Hb_029866_100 0.0840451322 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
3 Hb_028308_010 0.088459161 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
4 Hb_029904_020 0.0889234924 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
5 Hb_000031_280 0.0939665759 - - -
6 Hb_000392_370 0.095479945 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
7 Hb_009049_020 0.0979211612 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
8 Hb_001085_320 0.0990176002 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
9 Hb_017295_010 0.0995859419 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
10 Hb_002398_030 0.100016565 - - amino acid binding protein, putative [Ricinus communis]
11 Hb_002837_060 0.1000507057 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
12 Hb_003858_040 0.1008257196 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
13 Hb_007951_040 0.1023032062 - - signal peptidase family protein [Populus trichocarpa]
14 Hb_000983_170 0.1028828413 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
15 Hb_003549_090 0.1042879191 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
16 Hb_008556_030 0.1043496754 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
17 Hb_005503_040 0.1048729599 - - PREDICTED: AMP deaminase [Jatropha curcas]
18 Hb_000101_380 0.1053251194 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
19 Hb_002273_120 0.1067867562 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
20 Hb_009529_030 0.1073943747 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001396_280 Hb_001396_280 Hb_029866_100 Hb_029866_100 Hb_001396_280--Hb_029866_100 Hb_028308_010 Hb_028308_010 Hb_001396_280--Hb_028308_010 Hb_029904_020 Hb_029904_020 Hb_001396_280--Hb_029904_020 Hb_000031_280 Hb_000031_280 Hb_001396_280--Hb_000031_280 Hb_000392_370 Hb_000392_370 Hb_001396_280--Hb_000392_370 Hb_009049_020 Hb_009049_020 Hb_001396_280--Hb_009049_020 Hb_001500_110 Hb_001500_110 Hb_029866_100--Hb_001500_110 Hb_012215_010 Hb_012215_010 Hb_029866_100--Hb_012215_010 Hb_000733_050 Hb_000733_050 Hb_029866_100--Hb_000733_050 Hb_002837_060 Hb_002837_060 Hb_029866_100--Hb_002837_060 Hb_000120_550 Hb_000120_550 Hb_029866_100--Hb_000120_550 Hb_000777_050 Hb_000777_050 Hb_028308_010--Hb_000777_050 Hb_001195_560 Hb_001195_560 Hb_028308_010--Hb_001195_560 Hb_009296_010 Hb_009296_010 Hb_028308_010--Hb_009296_010 Hb_000333_060 Hb_000333_060 Hb_028308_010--Hb_000333_060 Hb_002398_030 Hb_002398_030 Hb_028308_010--Hb_002398_030 Hb_001619_150 Hb_001619_150 Hb_028308_010--Hb_001619_150 Hb_001021_220 Hb_001021_220 Hb_029904_020--Hb_001021_220 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_008556_030 Hb_008556_030 Hb_000031_280--Hb_008556_030 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_002750_050 Hb_002750_050 Hb_000392_370--Hb_002750_050 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001584_370 Hb_001584_370 Hb_000392_370--Hb_001584_370 Hb_003430_090 Hb_003430_090 Hb_000392_370--Hb_003430_090 Hb_009049_020--Hb_000208_260 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_008120_010 Hb_008120_010 Hb_009049_020--Hb_008120_010 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2537 11.58 16.6149 25.1771 25.2915 26.4318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4004 6.27119 6.53168 11.849 12.6919

CAGE analysis