Hb_001396_290

Information

Type -
Description -
Location Contig1396: 212316-215494
Sequence    

Annotation

kegg
ID pmum:103322078
description ranBP2-type zinc finger protein At1g67325
nr
ID KJB30897.1
description hypothetical protein B456_005G166600 [Gossypium raimondii]
swissprot
ID Q8GZ43
description RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana GN=At1g67325 PE=1 SV=1
trembl
ID A0A0D2NE17
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G166600 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ran bp2 nzf zinc finger-like superfamily protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10779: 211943-215437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_290 0.0 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
2 Hb_000120_510 0.0627782833 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
3 Hb_004225_130 0.0689576445 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
4 Hb_002048_090 0.0693467358 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
5 Hb_000504_160 0.0700982384 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
6 Hb_006829_090 0.0727217593 - - PREDICTED: protein MOS2 [Jatropha curcas]
7 Hb_073171_080 0.0730729953 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
8 Hb_023020_060 0.073825606 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
9 Hb_001301_210 0.0753961957 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
10 Hb_009913_050 0.0780310659 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
11 Hb_000343_210 0.0780753293 - - ran-binding protein, putative [Ricinus communis]
12 Hb_001474_030 0.0821837019 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
13 Hb_002133_030 0.0824837079 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
14 Hb_002235_320 0.0838600678 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
15 Hb_002411_180 0.083880359 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
16 Hb_004374_150 0.0847828381 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
17 Hb_006002_030 0.084913562 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
18 Hb_000244_240 0.0858482357 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002883_010 0.089334645 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
20 Hb_000331_190 0.0894648359 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]

Gene co-expression network

sample Hb_001396_290 Hb_001396_290 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_001301_210 Hb_001301_210 Hb_000120_510--Hb_001301_210 Hb_000120_510--Hb_006829_090 Hb_000331_190 Hb_000331_190 Hb_000120_510--Hb_000331_190 Hb_000343_210 Hb_000343_210 Hb_000120_510--Hb_000343_210 Hb_000244_240 Hb_000244_240 Hb_000120_510--Hb_000244_240 Hb_002235_320 Hb_002235_320 Hb_004225_130--Hb_002235_320 Hb_004225_130--Hb_002048_090 Hb_006002_030 Hb_006002_030 Hb_004225_130--Hb_006002_030 Hb_000239_070 Hb_000239_070 Hb_004225_130--Hb_000239_070 Hb_002411_120 Hb_002411_120 Hb_004225_130--Hb_002411_120 Hb_002048_090--Hb_073171_080 Hb_009913_050 Hb_009913_050 Hb_002048_090--Hb_009913_050 Hb_002048_090--Hb_000244_240 Hb_002883_010 Hb_002883_010 Hb_002048_090--Hb_002883_010 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_000504_160--Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_006829_090--Hb_078477_040 Hb_006829_090--Hb_006002_030 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_005462_020 Hb_005462_020 Hb_006829_090--Hb_005462_020 Hb_000684_420 Hb_000684_420 Hb_073171_080--Hb_000684_420 Hb_004724_360 Hb_004724_360 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.7985 48.0495 23.4709 16.1978 83.7759 97.0365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.231 20.1369 14.4138 20.3312 15.7918

CAGE analysis