Hb_001401_110

Information

Type -
Description -
Location Contig1401: 129797-130087
Sequence    

Annotation

kegg
ID rcu:RCOM_1590750
description calmodulin 4, putative
nr
ID KDP38347.1
description hypothetical protein JCGZ_04272 [Jatropha curcas]
swissprot
ID P63317
description Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1
trembl
ID A0A067KQE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04272 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_110 0.0 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
2 Hb_000438_180 0.043688531 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_004807_070 0.0536472379 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
4 Hb_187906_010 0.0663360485 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
5 Hb_001269_430 0.0690513545 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
6 Hb_001712_010 0.0800336028 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
7 Hb_092272_010 0.0822545662 - - -
8 Hb_019299_010 0.0878672003 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000025_150 0.0889062893 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
10 Hb_001343_060 0.0908786051 - - Cytochrome P450 [Theobroma cacao]
11 Hb_000087_160 0.0913735061 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_011930_090 0.0921217887 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
13 Hb_021443_010 0.0953648537 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
14 Hb_001141_430 0.0963243215 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
15 Hb_003711_050 0.0977236807 - - Isoflavone reductase, putative [Ricinus communis]
16 Hb_004757_010 0.1011731941 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
17 Hb_180293_010 0.1043082662 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
18 Hb_012217_010 0.1043467261 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
19 Hb_000959_170 0.1043924441 - - Cell division protein kinase 7, putative [Ricinus communis]
20 Hb_000754_010 0.1043964677 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001401_110 Hb_001401_110 Hb_000438_180 Hb_000438_180 Hb_001401_110--Hb_000438_180 Hb_004807_070 Hb_004807_070 Hb_001401_110--Hb_004807_070 Hb_187906_010 Hb_187906_010 Hb_001401_110--Hb_187906_010 Hb_001269_430 Hb_001269_430 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010 Hb_000438_180--Hb_187906_010 Hb_000438_180--Hb_001269_430 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010 Hb_004807_070--Hb_001269_430 Hb_000201_060 Hb_000201_060 Hb_004807_070--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_004807_070--Hb_000754_010 Hb_006018_020 Hb_006018_020 Hb_004807_070--Hb_006018_020 Hb_001343_060 Hb_001343_060 Hb_004807_070--Hb_001343_060 Hb_000087_160 Hb_000087_160 Hb_187906_010--Hb_000087_160 Hb_019299_010 Hb_019299_010 Hb_187906_010--Hb_019299_010 Hb_000959_170 Hb_000959_170 Hb_187906_010--Hb_000959_170 Hb_009851_120 Hb_009851_120 Hb_187906_010--Hb_009851_120 Hb_001269_430--Hb_001343_060 Hb_011930_090 Hb_011930_090 Hb_001269_430--Hb_011930_090 Hb_011344_110 Hb_011344_110 Hb_001269_430--Hb_011344_110 Hb_001712_010--Hb_092272_010 Hb_000628_070 Hb_000628_070 Hb_001712_010--Hb_000628_070 Hb_001712_010--Hb_001343_060 Hb_001141_430 Hb_001141_430 Hb_001712_010--Hb_001141_430 Hb_001712_010--Hb_011344_110 Hb_004757_010 Hb_004757_010 Hb_001712_010--Hb_004757_010 Hb_118934_010 Hb_118934_010 Hb_092272_010--Hb_118934_010 Hb_001579_160 Hb_001579_160 Hb_092272_010--Hb_001579_160 Hb_025557_090 Hb_025557_090 Hb_092272_010--Hb_025557_090 Hb_000521_060 Hb_000521_060 Hb_092272_010--Hb_000521_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.3632 0.784514 19.6186 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.93495

CAGE analysis