Hb_001401_120

Information

Type -
Description -
Location Contig1401: 131776-132902
Sequence    

Annotation

kegg
ID rcu:RCOM_1590770
description hypothetical protein
nr
ID KDP38348.1
description hypothetical protein JCGZ_04273 [Jatropha curcas]
swissprot
ID Q9SRE6
description Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1
trembl
ID A0A067KTQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04273 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_120 0.0 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
2 Hb_148262_010 0.0477446024 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009117_020 0.0613982369 - - RALF-LIKE 32 family protein [Populus trichocarpa]
4 Hb_026124_020 0.0708401044 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
5 Hb_007579_030 0.0738108038 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_029238_040 0.0757784835 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
7 Hb_001366_300 0.0900626482 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
8 Hb_011381_050 0.0909668967 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
9 Hb_115572_010 0.0944405006 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
10 Hb_029665_010 0.0980054416 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_001680_050 0.100681834 - - -
12 Hb_000012_380 0.1062683262 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
13 Hb_000000_260 0.111365891 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
14 Hb_000197_260 0.1149626735 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
15 Hb_000599_160 0.1166364544 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
16 Hb_180980_010 0.1173169616 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
17 Hb_156850_050 0.1184996969 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
18 Hb_000983_130 0.1187767284 - - transcription factor, putative [Ricinus communis]
19 Hb_077774_010 0.1194285334 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_007545_220 0.1221056178 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]

Gene co-expression network

sample Hb_001401_120 Hb_001401_120 Hb_148262_010 Hb_148262_010 Hb_001401_120--Hb_148262_010 Hb_009117_020 Hb_009117_020 Hb_001401_120--Hb_009117_020 Hb_026124_020 Hb_026124_020 Hb_001401_120--Hb_026124_020 Hb_007579_030 Hb_007579_030 Hb_001401_120--Hb_007579_030 Hb_029238_040 Hb_029238_040 Hb_001401_120--Hb_029238_040 Hb_001366_300 Hb_001366_300 Hb_001401_120--Hb_001366_300 Hb_148262_010--Hb_026124_020 Hb_148262_010--Hb_009117_020 Hb_000012_380 Hb_000012_380 Hb_148262_010--Hb_000012_380 Hb_000245_110 Hb_000245_110 Hb_148262_010--Hb_000245_110 Hb_148262_010--Hb_007579_030 Hb_115572_010 Hb_115572_010 Hb_009117_020--Hb_115572_010 Hb_011381_050 Hb_011381_050 Hb_009117_020--Hb_011381_050 Hb_005614_020 Hb_005614_020 Hb_009117_020--Hb_005614_020 Hb_009117_020--Hb_026124_020 Hb_026124_020--Hb_000012_380 Hb_026124_020--Hb_000245_110 Hb_026124_020--Hb_001366_300 Hb_077774_010 Hb_077774_010 Hb_026124_020--Hb_077774_010 Hb_001680_050 Hb_001680_050 Hb_007579_030--Hb_001680_050 Hb_029665_010 Hb_029665_010 Hb_007579_030--Hb_029665_010 Hb_007579_030--Hb_001366_300 Hb_007579_030--Hb_029238_040 Hb_000197_260 Hb_000197_260 Hb_007579_030--Hb_000197_260 Hb_156850_050 Hb_156850_050 Hb_029238_040--Hb_156850_050 Hb_004102_200 Hb_004102_200 Hb_029238_040--Hb_004102_200 Hb_000983_130 Hb_000983_130 Hb_029238_040--Hb_000983_130 Hb_004450_090 Hb_004450_090 Hb_029238_040--Hb_004450_090 Hb_001366_300--Hb_077774_010 Hb_001366_300--Hb_148262_010 Hb_001366_300--Hb_000983_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.485742 0.263803 2.30791 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.06667

CAGE analysis