Hb_001403_030

Information

Type -
Description -
Location Contig1403: 39013-39285
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001403_030 0.0 - - -
2 Hb_000971_060 0.0048687864 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000201_020 0.0069565971 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
4 Hb_001545_250 0.0073598623 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
5 Hb_010760_010 0.0163595733 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_070247_010 0.022135041 - - hypothetical protein [Pseudomonas tolaasii]
7 Hb_020818_010 0.0237363478 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
8 Hb_000450_140 0.0261686791 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
9 Hb_012286_070 0.0262679534 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
10 Hb_000572_050 0.034489369 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
11 Hb_005841_030 0.0427371043 - - -
12 Hb_005142_010 0.0470314715 - - -
13 Hb_008839_030 0.0908346815 - - conserved hypothetical protein [Ricinus communis]
14 Hb_060455_010 0.099907968 - - 50 kDa protein [Hevea brasiliensis]
15 Hb_004785_010 0.1027835295 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_000174_190 0.1068580235 - - unnamed protein product [Coffea canephora]
17 Hb_076908_010 0.1075740178 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_083493_050 0.108090405 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
19 Hb_149358_010 0.1094558756 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_001110_020 0.1116773235 - - hypothetical protein JCGZ_03693 [Jatropha curcas]

Gene co-expression network

sample Hb_001403_030 Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_001403_030--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_001403_030--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_001403_030--Hb_001545_250 Hb_010760_010 Hb_010760_010 Hb_001403_030--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_001403_030--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_001403_030--Hb_020818_010 Hb_000971_060--Hb_000201_020 Hb_000971_060--Hb_001545_250 Hb_000971_060--Hb_010760_010 Hb_000971_060--Hb_070247_010 Hb_000971_060--Hb_020818_010 Hb_000201_020--Hb_001545_250 Hb_000201_020--Hb_010760_010 Hb_000201_020--Hb_070247_010 Hb_000201_020--Hb_020818_010 Hb_001545_250--Hb_010760_010 Hb_001545_250--Hb_070247_010 Hb_001545_250--Hb_020818_010 Hb_010760_010--Hb_070247_010 Hb_010760_010--Hb_020818_010 Hb_000450_140 Hb_000450_140 Hb_010760_010--Hb_000450_140 Hb_012286_070 Hb_012286_070 Hb_010760_010--Hb_012286_070 Hb_070247_010--Hb_020818_010 Hb_070247_010--Hb_000450_140 Hb_070247_010--Hb_012286_070 Hb_020818_010--Hb_000450_140 Hb_020818_010--Hb_012286_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.5871 0.355082 0

CAGE analysis