Hb_001403_070

Information

Type -
Description -
Location Contig1403: 73980-81759
Sequence    

Annotation

kegg
ID cic:CICLE_v10027269mg
description hypothetical protein
nr
ID XP_011020233.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067KMI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10927: 74139-76850 , PASA_asmbl_10928: 77319-77535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001403_070 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
2 Hb_001749_020 0.084197932 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
3 Hb_006124_040 0.0919696499 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_022630_010 0.0971378971 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_011924_030 0.1003581284 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001486_130 0.1025408768 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
7 Hb_006452_140 0.1029849237 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
8 Hb_078477_010 0.1065229869 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
9 Hb_002193_050 0.1103480931 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
10 Hb_005648_030 0.1114691924 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
11 Hb_007850_050 0.1120596283 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
12 Hb_002648_020 0.1130521427 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
13 Hb_008707_020 0.114702908 - - ATP binding protein, putative [Ricinus communis]
14 Hb_003683_090 0.1157968288 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_000796_100 0.1177673674 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_003847_140 0.1218514099 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
17 Hb_000699_200 0.1227377522 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
18 Hb_039650_010 0.1232273897 - - cellulose synthase-like protein [Populus tomentosa]
19 Hb_005000_230 0.1239497668 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
20 Hb_001376_020 0.1240319271 - - hypothetical protein JCGZ_01547 [Jatropha curcas]

Gene co-expression network

sample Hb_001403_070 Hb_001403_070 Hb_001749_020 Hb_001749_020 Hb_001403_070--Hb_001749_020 Hb_006124_040 Hb_006124_040 Hb_001403_070--Hb_006124_040 Hb_022630_010 Hb_022630_010 Hb_001403_070--Hb_022630_010 Hb_011924_030 Hb_011924_030 Hb_001403_070--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_001403_070--Hb_001486_130 Hb_006452_140 Hb_006452_140 Hb_001403_070--Hb_006452_140 Hb_001749_020--Hb_001486_130 Hb_001376_020 Hb_001376_020 Hb_001749_020--Hb_001376_020 Hb_008707_020 Hb_008707_020 Hb_001749_020--Hb_008707_020 Hb_004656_030 Hb_004656_030 Hb_001749_020--Hb_004656_030 Hb_000656_360 Hb_000656_360 Hb_001749_020--Hb_000656_360 Hb_006124_040--Hb_006452_140 Hb_030312_060 Hb_030312_060 Hb_006124_040--Hb_030312_060 Hb_002648_020 Hb_002648_020 Hb_006124_040--Hb_002648_020 Hb_003683_090 Hb_003683_090 Hb_006124_040--Hb_003683_090 Hb_000699_200 Hb_000699_200 Hb_006124_040--Hb_000699_200 Hb_078477_010 Hb_078477_010 Hb_022630_010--Hb_078477_010 Hb_005648_030 Hb_005648_030 Hb_022630_010--Hb_005648_030 Hb_022630_010--Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_022630_010--Hb_027913_010 Hb_002193_050 Hb_002193_050 Hb_022630_010--Hb_002193_050 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_000035_360 Hb_000035_360 Hb_011924_030--Hb_000035_360 Hb_000284_060 Hb_000284_060 Hb_011924_030--Hb_000284_060 Hb_003847_140 Hb_003847_140 Hb_011924_030--Hb_003847_140 Hb_000796_100 Hb_000796_100 Hb_011924_030--Hb_000796_100 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_001486_130--Hb_001376_020 Hb_001486_130--Hb_008707_020 Hb_004931_050 Hb_004931_050 Hb_001486_130--Hb_004931_050 Hb_001486_130--Hb_000035_360 Hb_006452_140--Hb_000796_100 Hb_006452_140--Hb_002648_020 Hb_001271_040 Hb_001271_040 Hb_006452_140--Hb_001271_040 Hb_001403_100 Hb_001403_100 Hb_006452_140--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_006452_140--Hb_001104_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0226452 82.8798 2.85835 1.26127 0.0687886 0.0234851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.91119 0.148846

CAGE analysis