Hb_001404_010

Information

Type -
Description -
Location Contig1404: 5646-26603
Sequence    

Annotation

kegg
ID mus:103981128
description uncharacterized protein LOC103981128 isoform X1
nr
ID KDP43266.1
description hypothetical protein JCGZ_22818 [Jatropha curcas]
swissprot
ID O94264
description Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.15c PE=3 SV=1
trembl
ID A0A067L489
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22818 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10933: 25593-26015
cDNA
(Sanger)
(ID:Location)		 027_G03.ab1: 25593-26006 , 030_H18.ab1: 25593-26015 , 043_A04.ab1: 25593-26006

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001404_010 0.0 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
2 Hb_031530_010 0.0813745271 - - DWNN domain isoform 2 [Theobroma cacao]
3 Hb_082225_010 0.1077246362 - - DWNN domain isoform 2 [Theobroma cacao]
4 Hb_000313_190 0.1228529757 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
5 Hb_000221_280 0.1354206081 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
6 Hb_000529_050 0.1390125372 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_001477_080 0.1407332318 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
8 Hb_000731_020 0.1411449529 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
9 Hb_032920_040 0.141390336 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
10 Hb_000827_090 0.1504397281 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
11 Hb_003023_060 0.1505139649 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
12 Hb_001213_140 0.1554596646 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
13 Hb_019654_010 0.155573613 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_000134_010 0.1585297783 - - -
15 Hb_094839_010 0.1588759983 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002922_010 0.1590470802 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
17 Hb_010573_030 0.15934131 - - conserved hypothetical protein [Ricinus communis]
18 Hb_125884_010 0.1610021644 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
19 Hb_002107_080 0.1624916673 - - JHL20J20.3 [Jatropha curcas]
20 Hb_004242_160 0.1639222603 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001404_010 Hb_001404_010 Hb_031530_010 Hb_031530_010 Hb_001404_010--Hb_031530_010 Hb_082225_010 Hb_082225_010 Hb_001404_010--Hb_082225_010 Hb_000313_190 Hb_000313_190 Hb_001404_010--Hb_000313_190 Hb_000221_280 Hb_000221_280 Hb_001404_010--Hb_000221_280 Hb_000529_050 Hb_000529_050 Hb_001404_010--Hb_000529_050 Hb_001477_080 Hb_001477_080 Hb_001404_010--Hb_001477_080 Hb_031530_010--Hb_082225_010 Hb_032920_040 Hb_032920_040 Hb_031530_010--Hb_032920_040 Hb_000827_090 Hb_000827_090 Hb_031530_010--Hb_000827_090 Hb_031530_010--Hb_000313_190 Hb_003023_060 Hb_003023_060 Hb_031530_010--Hb_003023_060 Hb_082225_010--Hb_032920_040 Hb_082225_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_082225_010--Hb_010142_040 Hb_158926_010 Hb_158926_010 Hb_082225_010--Hb_158926_010 Hb_000313_190--Hb_000529_050 Hb_000313_190--Hb_001477_080 Hb_000313_190--Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_000313_190--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_000313_190--Hb_003071_040 Hb_004242_160 Hb_004242_160 Hb_000313_190--Hb_004242_160 Hb_000221_280--Hb_000731_020 Hb_000221_280--Hb_000529_050 Hb_001213_140 Hb_001213_140 Hb_000221_280--Hb_001213_140 Hb_029622_080 Hb_029622_080 Hb_000221_280--Hb_029622_080 Hb_000221_280--Hb_003071_040 Hb_000529_050--Hb_001477_080 Hb_004586_120 Hb_004586_120 Hb_000529_050--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_000529_050--Hb_000322_020 Hb_032260_100 Hb_032260_100 Hb_000529_050--Hb_032260_100 Hb_001477_080--Hb_004242_160 Hb_002922_010 Hb_002922_010 Hb_001477_080--Hb_002922_010 Hb_001477_080--Hb_004586_120 Hb_001477_080--Hb_000322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131395 2.34375 0.420336 0.87866 0.0320238 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0148994 0.117246 0 0.0186039 0.0250039

CAGE analysis