Hb_001404_070

Information

Type -
Description -
Location Contig1404: 47800-52125
Sequence    

Annotation

kegg
ID pop:POPTR_0018s07380g
description POPTRDRAFT_835735; sucrose synthase family protein
nr
ID AGM14949.1
description sucrose synthase 4 [Hevea brasiliensis]
swissprot
ID P13708
description Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2
trembl
ID A0A023HKA5
description Sucrose synthase 4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016157
description sucrose synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10935: 47867-53202 , PASA_asmbl_10936: 47786-54420 , PASA_asmbl_10937: 47786-54420 , PASA_asmbl_10938: 47786-52657
cDNA
(Sanger)
(ID:Location)		 006_A09.ab1: 48254-49275 , 012_N09.ab1: 47893-48811

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001404_070 0.0 - - sucrose synthase 4 [Hevea brasiliensis]
2 Hb_000959_130 0.1013991477 - - organic anion transporter, putative [Ricinus communis]
3 Hb_002750_040 0.1079640255 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
4 Hb_005545_110 0.1185480796 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
5 Hb_009456_010 0.124638823 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
6 Hb_141194_020 0.1280882249 - - carbohydrate transporter, putative [Ricinus communis]
7 Hb_004667_030 0.1296922807 - - hypothetical protein VITISV_034568 [Vitis vinifera]
8 Hb_002809_080 0.1302681164 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003052_080 0.1306680393 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
10 Hb_000329_010 0.1317415351 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
11 Hb_002566_020 0.132312079 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
12 Hb_002783_180 0.1336210989 - - Tubulin beta-6 chain [Gossypium arboreum]
13 Hb_003633_170 0.1348767402 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002203_020 0.1351161637 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000463_120 0.1362237331 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
16 Hb_009122_010 0.1367122625 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_007370_010 0.1372679037 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
18 Hb_006615_230 0.1373200232 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_031224_010 0.1375462573 - - -
20 Hb_000462_190 0.1396675299 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001404_070 Hb_001404_070 Hb_000959_130 Hb_000959_130 Hb_001404_070--Hb_000959_130 Hb_002750_040 Hb_002750_040 Hb_001404_070--Hb_002750_040 Hb_005545_110 Hb_005545_110 Hb_001404_070--Hb_005545_110 Hb_009456_010 Hb_009456_010 Hb_001404_070--Hb_009456_010 Hb_141194_020 Hb_141194_020 Hb_001404_070--Hb_141194_020 Hb_004667_030 Hb_004667_030 Hb_001404_070--Hb_004667_030 Hb_134014_010 Hb_134014_010 Hb_000959_130--Hb_134014_010 Hb_006615_230 Hb_006615_230 Hb_000959_130--Hb_006615_230 Hb_012395_050 Hb_012395_050 Hb_000959_130--Hb_012395_050 Hb_000574_170 Hb_000574_170 Hb_000959_130--Hb_000574_170 Hb_189003_070 Hb_189003_070 Hb_000959_130--Hb_189003_070 Hb_026198_020 Hb_026198_020 Hb_002750_040--Hb_026198_020 Hb_113766_010 Hb_113766_010 Hb_002750_040--Hb_113766_010 Hb_009122_010 Hb_009122_010 Hb_002750_040--Hb_009122_010 Hb_002391_240 Hb_002391_240 Hb_002750_040--Hb_002391_240 Hb_001269_580 Hb_001269_580 Hb_002750_040--Hb_001269_580 Hb_152980_020 Hb_152980_020 Hb_005545_110--Hb_152980_020 Hb_003633_170 Hb_003633_170 Hb_005545_110--Hb_003633_170 Hb_005545_110--Hb_002750_040 Hb_031224_010 Hb_031224_010 Hb_005545_110--Hb_031224_010 Hb_001728_130 Hb_001728_130 Hb_005545_110--Hb_001728_130 Hb_002566_020 Hb_002566_020 Hb_009456_010--Hb_002566_020 Hb_002783_180 Hb_002783_180 Hb_009456_010--Hb_002783_180 Hb_007370_010 Hb_007370_010 Hb_009456_010--Hb_007370_010 Hb_001777_010 Hb_001777_010 Hb_009456_010--Hb_001777_010 Hb_009456_010--Hb_031224_010 Hb_000389_100 Hb_000389_100 Hb_009456_010--Hb_000389_100 Hb_001410_080 Hb_001410_080 Hb_141194_020--Hb_001410_080 Hb_005332_160 Hb_005332_160 Hb_141194_020--Hb_005332_160 Hb_003376_140 Hb_003376_140 Hb_141194_020--Hb_003376_140 Hb_169077_030 Hb_169077_030 Hb_141194_020--Hb_169077_030 Hb_141194_020--Hb_007370_010 Hb_000910_030 Hb_000910_030 Hb_141194_020--Hb_000910_030 Hb_004667_030--Hb_003633_170 Hb_033772_060 Hb_033772_060 Hb_004667_030--Hb_033772_060 Hb_004667_030--Hb_031224_010 Hb_065521_010 Hb_065521_010 Hb_004667_030--Hb_065521_010 Hb_004667_030--Hb_002566_020 Hb_001677_090 Hb_001677_090 Hb_004667_030--Hb_001677_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16515 38.9726 116.06 445.044 12.9224 2.78556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91374 3.59097 4.40613 168.531 209.326

CAGE analysis