Hb_001404_100

Information

Type -
Description -
Location Contig1404: 93340-97984
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13880g
description Eukaryotic translation initiation factor 3 subunit 11 family protein
nr
ID XP_012446517.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
swissprot
ID Q9SZA3
description Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1
trembl
ID A0A0D2RTQ2
description Eukaryotic translation initiation factor 3 subunit K OS=Gossypium raimondii GN=B456_009G038100 PE=3 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3 subunit k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10946: 93383-97955 , PASA_asmbl_10947: 93501-96504 , PASA_asmbl_10948: 97213-97529
cDNA
(Sanger)
(ID:Location)		 049_O11.ab1: 93383-97598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001404_100 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
2 Hb_010661_030 0.0614862816 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
3 Hb_005993_040 0.0730189379 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
4 Hb_000771_120 0.073219459 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
5 Hb_002233_150 0.0740791624 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
6 Hb_002043_190 0.0746850732 - - rwd domain-containing protein, putative [Ricinus communis]
7 Hb_004491_010 0.0746942934 - - 60S ribosomal protein L51, putative [Ricinus communis]
8 Hb_001635_170 0.0763486371 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
9 Hb_011689_080 0.0765745627 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
10 Hb_002685_140 0.0776892423 - - PREDICTED: membrin-11 [Jatropha curcas]
11 Hb_000392_440 0.0782036604 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
12 Hb_003078_040 0.0783487042 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
13 Hb_028995_040 0.078491973 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
14 Hb_007154_020 0.0790730684 - - -
15 Hb_000494_020 0.079357093 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
16 Hb_015746_010 0.0793926509 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
17 Hb_007477_070 0.0795784229 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
18 Hb_002928_130 0.0810652148 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
19 Hb_025645_010 0.081360941 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
20 Hb_000061_370 0.0824213173 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]

Gene co-expression network

sample Hb_001404_100 Hb_001404_100 Hb_010661_030 Hb_010661_030 Hb_001404_100--Hb_010661_030 Hb_005993_040 Hb_005993_040 Hb_001404_100--Hb_005993_040 Hb_000771_120 Hb_000771_120 Hb_001404_100--Hb_000771_120 Hb_002233_150 Hb_002233_150 Hb_001404_100--Hb_002233_150 Hb_002043_190 Hb_002043_190 Hb_001404_100--Hb_002043_190 Hb_004491_010 Hb_004491_010 Hb_001404_100--Hb_004491_010 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_025645_010 Hb_025645_010 Hb_000771_120--Hb_025645_010 Hb_000302_270 Hb_000302_270 Hb_000771_120--Hb_000302_270 Hb_003747_200 Hb_003747_200 Hb_000771_120--Hb_003747_200 Hb_007477_070 Hb_007477_070 Hb_000771_120--Hb_007477_070 Hb_028995_040 Hb_028995_040 Hb_000771_120--Hb_028995_040 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002233_150--Hb_002043_190 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_004491_010--Hb_000041_270 Hb_004491_010--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.6877 32.5432 50.6314 22.1453 68.6822 62.1561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.2516 85.0176 59.6056 43.0506 15.7323

CAGE analysis