Hb_001405_050

Information

Type -
Description -
Location Contig1405: 109191-113772
Sequence    

Annotation

kegg
ID gmx:100500641
description uncharacterized LOC100500641
nr
ID XP_003518966.1
description PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
swissprot
ID -
description -
trembl
ID A0A0B2Q249
description Uncharacterized protein OS=Glycine soja GN=glysoja_039052 PE=4 SV=1
Gene Ontology
ID GO:0005643
description sporulation-specific 71

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10956: 109246-113734 , PASA_asmbl_10957: 110148-110237 , PASA_asmbl_10958: 112227-112395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_050 0.0 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
2 Hb_143766_090 0.0852781262 - - 60S ribosomal protein L31B [Hevea brasiliensis]
3 Hb_001776_090 0.0900868238 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
4 Hb_019962_030 0.0945051385 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
5 Hb_002681_040 0.0968372976 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
6 Hb_004204_070 0.1004273715 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
7 Hb_000538_020 0.1013805222 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
8 Hb_003688_100 0.1046858391 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
9 Hb_000573_070 0.1061730939 - - hypothetical protein JCGZ_14808 [Jatropha curcas]
10 Hb_010449_020 0.1067739512 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
11 Hb_012675_090 0.1094798012 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
12 Hb_011794_090 0.1106741724 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
13 Hb_000107_390 0.1117839178 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
14 Hb_001514_020 0.1122693121 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
15 Hb_006501_150 0.1125557261 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004046_040 0.1132497492 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
17 Hb_001348_070 0.1134294021 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_000141_060 0.1140737812 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
19 Hb_005535_050 0.1142502576 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
20 Hb_000270_840 0.1154410701 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_001405_050 Hb_001405_050 Hb_143766_090 Hb_143766_090 Hb_001405_050--Hb_143766_090 Hb_001776_090 Hb_001776_090 Hb_001405_050--Hb_001776_090 Hb_019962_030 Hb_019962_030 Hb_001405_050--Hb_019962_030 Hb_002681_040 Hb_002681_040 Hb_001405_050--Hb_002681_040 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_000141_060 Hb_000141_060 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001545_040 Hb_001545_040 Hb_001776_090--Hb_001545_040 Hb_007154_020 Hb_007154_020 Hb_001776_090--Hb_007154_020 Hb_001828_090 Hb_001828_090 Hb_001776_090--Hb_001828_090 Hb_011381_060 Hb_011381_060 Hb_001776_090--Hb_011381_060 Hb_001379_060 Hb_001379_060 Hb_001776_090--Hb_001379_060 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_010449_020 Hb_010449_020 Hb_002681_040--Hb_010449_020 Hb_005545_030 Hb_005545_030 Hb_002681_040--Hb_005545_030 Hb_000768_050 Hb_000768_050 Hb_002681_040--Hb_000768_050 Hb_002681_040--Hb_003688_100 Hb_000680_150 Hb_000680_150 Hb_002681_040--Hb_000680_150 Hb_011794_090 Hb_011794_090 Hb_004204_070--Hb_011794_090 Hb_002272_250 Hb_002272_250 Hb_004204_070--Hb_002272_250 Hb_004994_170 Hb_004994_170 Hb_004204_070--Hb_004994_170 Hb_004204_070--Hb_000141_060 Hb_010661_030 Hb_010661_030 Hb_004204_070--Hb_010661_030 Hb_001404_100 Hb_001404_100 Hb_004204_070--Hb_001404_100 Hb_000107_390 Hb_000107_390 Hb_000538_020--Hb_000107_390 Hb_000538_020--Hb_000666_110 Hb_000270_840 Hb_000270_840 Hb_000538_020--Hb_000270_840 Hb_000538_020--Hb_004722_060 Hb_000538_020--Hb_019962_030 Hb_000538_020--Hb_005527_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
346.741 61.8937 132.392 29.5441 235.172 190.382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
221.797 307.927 105.088 48.9667 27.9113

CAGE analysis