Hb_001405_070

Information

Type -
Description -
Location Contig1405: 118304-120859
Sequence    

Annotation

kegg
ID rcu:RCOM_0909460
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012069744.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
swissprot
ID Q9LS88
description Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
trembl
ID A0A067L702
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02263 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at3g23020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10961: 118377-118634 , PASA_asmbl_10963: 119552-119836 , PASA_asmbl_10964: 120259-120971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
2 Hb_000417_200 0.0399203102 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
3 Hb_011671_410 0.082678369 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
4 Hb_012725_060 0.0840512177 - - protein binding protein, putative [Ricinus communis]
5 Hb_000230_500 0.0858028451 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
6 Hb_002542_110 0.0876364737 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
7 Hb_000170_130 0.0884168808 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
8 Hb_002988_040 0.0895287553 - - -
9 Hb_002235_040 0.0930832794 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
10 Hb_002686_090 0.096172407 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
11 Hb_032717_060 0.0973827875 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
12 Hb_001541_070 0.1034457923 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
13 Hb_001999_090 0.1037646945 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
14 Hb_062226_070 0.1043039076 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
15 Hb_001242_130 0.1053595535 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
16 Hb_000497_300 0.1065966913 - - peroxisomal membrane protein [Hevea brasiliensis]
17 Hb_000640_040 0.1069577603 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
18 Hb_027472_070 0.1092645261 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
19 Hb_066920_030 0.1098837442 - - PREDICTED: adagio protein 1 [Jatropha curcas]
20 Hb_001716_040 0.1103212823 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001405_070 Hb_001405_070 Hb_000417_200 Hb_000417_200 Hb_001405_070--Hb_000417_200 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_012725_060 Hb_012725_060 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_002542_110 Hb_002542_110 Hb_001405_070--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_001405_070--Hb_000170_130 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_011671_410--Hb_000170_130 Hb_005736_020 Hb_005736_020 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_000672_040 Hb_000672_040 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_001999_290 Hb_001999_290 Hb_011671_410--Hb_001999_290 Hb_012725_060--Hb_001242_130 Hb_027472_070 Hb_027472_070 Hb_012725_060--Hb_027472_070 Hb_001865_070 Hb_001865_070 Hb_012725_060--Hb_001865_070 Hb_012725_060--Hb_002235_040 Hb_005188_020 Hb_005188_020 Hb_000230_500--Hb_005188_020 Hb_000041_100 Hb_000041_100 Hb_000230_500--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_030565_030 Hb_030565_030 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_001716_040 Hb_001716_040 Hb_002542_110--Hb_001716_040 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_000170_130--Hb_002686_090 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_000170_130--Hb_062226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9115 5.94535 2.37945 2.71331 2.12659 2.37954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48385 4.50626 6.10936 3.23343 6.46587

CAGE analysis