Hb_001405_090

Information

Type -
Description -
Location Contig1405: 132906-134222
Sequence    

Annotation

kegg
ID tcc:TCM_020763
description NAD(P)H dehydrogenase 18
nr
ID XP_012069747.1
description PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
swissprot
ID Q9FG89
description Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thaliana GN=PNSB5 PE=2 SV=1
trembl
ID A0A067KVX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02265 PE=4 SV=1
Gene Ontology
ID GO:0009535
description photosynthetic ndh subunit of subcomplex b chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10967: 132925-134374
cDNA
(Sanger)
(ID:Location)		 040_L12.ab1: 132925-134197

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_090 0.0 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
2 Hb_006620_070 0.0870044491 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
3 Hb_004459_060 0.1112376139 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
4 Hb_000442_070 0.1122617787 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
5 Hb_007694_060 0.1132540599 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
6 Hb_011114_020 0.1143728205 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
7 Hb_000206_170 0.1296054466 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
8 Hb_023732_050 0.1310157797 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_002232_380 0.138339663 - - malate dehydrogenase, putative [Ricinus communis]
10 Hb_000005_130 0.1390781166 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
11 Hb_002411_100 0.139391141 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
12 Hb_001133_100 0.143451554 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
13 Hb_003038_100 0.145614818 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
14 Hb_005563_040 0.1502364267 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
15 Hb_006829_080 0.151256441 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
16 Hb_002150_130 0.1514669263 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
17 Hb_004545_010 0.1521718802 - - acyl carrier protein [Ricinus communis]
18 Hb_000042_290 0.153012761 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
19 Hb_000368_120 0.1537910928 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
20 Hb_003948_020 0.1545557335 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]

Gene co-expression network

sample Hb_001405_090 Hb_001405_090 Hb_006620_070 Hb_006620_070 Hb_001405_090--Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_001405_090--Hb_004459_060 Hb_000442_070 Hb_000442_070 Hb_001405_090--Hb_000442_070 Hb_007694_060 Hb_007694_060 Hb_001405_090--Hb_007694_060 Hb_011114_020 Hb_011114_020 Hb_001405_090--Hb_011114_020 Hb_000206_170 Hb_000206_170 Hb_001405_090--Hb_000206_170 Hb_006620_070--Hb_004459_060 Hb_006620_070--Hb_007694_060 Hb_000005_130 Hb_000005_130 Hb_006620_070--Hb_000005_130 Hb_002411_100 Hb_002411_100 Hb_006620_070--Hb_002411_100 Hb_006620_070--Hb_000442_070 Hb_004459_060--Hb_007694_060 Hb_000146_030 Hb_000146_030 Hb_004459_060--Hb_000146_030 Hb_004459_060--Hb_002411_100 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_004459_060--Hb_000005_130 Hb_010557_010 Hb_010557_010 Hb_000442_070--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000442_070--Hb_005563_040 Hb_000442_070--Hb_011114_020 Hb_000442_070--Hb_002411_100 Hb_003948_020 Hb_003948_020 Hb_000442_070--Hb_003948_020 Hb_007694_060--Hb_000005_130 Hb_005488_160 Hb_005488_160 Hb_007694_060--Hb_005488_160 Hb_023732_050 Hb_023732_050 Hb_007694_060--Hb_023732_050 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_011114_020--Hb_002411_100 Hb_011114_020--Hb_000005_130 Hb_011114_020--Hb_006620_070 Hb_011114_020--Hb_000146_030 Hb_000206_170--Hb_002411_100 Hb_011519_050 Hb_011519_050 Hb_000206_170--Hb_011519_050 Hb_000206_170--Hb_004459_060 Hb_000206_170--Hb_006620_070 Hb_002272_220 Hb_002272_220 Hb_000206_170--Hb_002272_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.81308 4.17531 74.1394 23.5492 3.76709 3.65241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8003 22.6581 4.15287 4.1563 109.044

CAGE analysis