Hb_001405_100

Information

Type -
Description -
Location Contig1405: 138953-142835
Sequence    

Annotation

kegg
ID rcu:RCOM_0909430
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.30)
nr
ID XP_012069750.1
description PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
swissprot
ID O64825
description LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1
trembl
ID A0A067KZA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02266 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10968: 140052-140538 , PASA_asmbl_10969: 140740-142663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_100 0.0 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
2 Hb_000238_060 0.0532642578 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_000237_150 0.0782445258 - - Epoxide hydrolase 2 [Morus notabilis]
4 Hb_002671_110 0.0883743294 - - PREDICTED: remorin-like [Jatropha curcas]
5 Hb_006006_070 0.0936566039 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000852_050 0.097821692 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
7 Hb_000649_030 0.1035555206 - - scab resistance family protein [Populus trichocarpa]
8 Hb_002110_270 0.1070578135 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
9 Hb_002900_070 0.1089940033 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000539_080 0.1113627723 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
11 Hb_000081_020 0.1121366064 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
12 Hb_000616_050 0.1123128241 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
13 Hb_001838_050 0.1134321215 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
14 Hb_000984_080 0.1139231635 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
15 Hb_000441_170 0.1140198886 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
16 Hb_005228_170 0.1159845037 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_076895_020 0.1165973789 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
18 Hb_166813_010 0.1187670528 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_001638_110 0.1224129372 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000758_030 0.122571818 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001405_100 Hb_001405_100 Hb_000238_060 Hb_000238_060 Hb_001405_100--Hb_000238_060 Hb_000237_150 Hb_000237_150 Hb_001405_100--Hb_000237_150 Hb_002671_110 Hb_002671_110 Hb_001405_100--Hb_002671_110 Hb_006006_070 Hb_006006_070 Hb_001405_100--Hb_006006_070 Hb_000852_050 Hb_000852_050 Hb_001405_100--Hb_000852_050 Hb_000649_030 Hb_000649_030 Hb_001405_100--Hb_000649_030 Hb_000238_060--Hb_000237_150 Hb_000238_060--Hb_000852_050 Hb_000238_060--Hb_002671_110 Hb_000081_020 Hb_000081_020 Hb_000238_060--Hb_000081_020 Hb_005228_170 Hb_005228_170 Hb_000238_060--Hb_005228_170 Hb_000237_150--Hb_000852_050 Hb_000616_050 Hb_000616_050 Hb_000237_150--Hb_000616_050 Hb_000237_150--Hb_000649_030 Hb_000237_150--Hb_002671_110 Hb_002671_110--Hb_005228_170 Hb_005218_070 Hb_005218_070 Hb_002671_110--Hb_005218_070 Hb_002081_040 Hb_002081_040 Hb_002671_110--Hb_002081_040 Hb_002110_270 Hb_002110_270 Hb_006006_070--Hb_002110_270 Hb_076895_020 Hb_076895_020 Hb_006006_070--Hb_076895_020 Hb_000758_030 Hb_000758_030 Hb_006006_070--Hb_000758_030 Hb_002232_400 Hb_002232_400 Hb_006006_070--Hb_002232_400 Hb_000539_080 Hb_000539_080 Hb_006006_070--Hb_000539_080 Hb_000441_170 Hb_000441_170 Hb_006006_070--Hb_000441_170 Hb_002150_010 Hb_002150_010 Hb_000852_050--Hb_002150_010 Hb_002391_350 Hb_002391_350 Hb_000852_050--Hb_002391_350 Hb_001638_110 Hb_001638_110 Hb_000852_050--Hb_001638_110 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000649_030--Hb_000238_060 Hb_000649_030--Hb_000616_050 Hb_019229_020 Hb_019229_020 Hb_000649_030--Hb_019229_020 Hb_111582_010 Hb_111582_010 Hb_000649_030--Hb_111582_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0442569 6.74893 1.45178 4.39456 0 0.0119658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0244561 0.0919104 20.9967 0.409377

CAGE analysis