Hb_001405_120

Information

Type -
Description -
Location Contig1405: 167105-177657
Sequence    

Annotation

kegg
ID vvi:100248036
description eukaryotic translation initiation factor 3 subunit H
nr
ID XP_012067794.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
swissprot
ID Q9C5Z2
description Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=1 SV=2
trembl
ID A0A067L9Z1
description Eukaryotic translation initiation factor 3 subunit H OS=Jatropha curcas GN=JCGZ_15722 PE=3 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3 subunit h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10970: 167144-167480 , PASA_asmbl_10971: 168406-177555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_120 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
2 Hb_003467_010 0.0818949657 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
3 Hb_008055_040 0.0821986673 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
4 Hb_007632_110 0.0841435317 - - chromatin regulatory protein sir2, putative [Ricinus communis]
5 Hb_009222_010 0.0842874376 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000189_340 0.0849840842 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
7 Hb_003849_060 0.08665003 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
8 Hb_003752_080 0.0903986361 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
9 Hb_001766_150 0.0905376438 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_011942_080 0.0917725411 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
11 Hb_006355_010 0.0929840088 - - PREDICTED: protein NLRC3 [Jatropha curcas]
12 Hb_001105_010 0.0930247047 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
13 Hb_004450_060 0.096520694 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
14 Hb_000334_270 0.0984499739 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_001486_340 0.0989020443 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
16 Hb_002175_030 0.1006674645 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
17 Hb_002233_150 0.1021073847 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
18 Hb_011848_010 0.1022535327 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
19 Hb_000394_190 0.1028315402 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_000174_110 0.1030526378 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_001405_120 Hb_001405_120 Hb_003467_010 Hb_003467_010 Hb_001405_120--Hb_003467_010 Hb_008055_040 Hb_008055_040 Hb_001405_120--Hb_008055_040 Hb_007632_110 Hb_007632_110 Hb_001405_120--Hb_007632_110 Hb_009222_010 Hb_009222_010 Hb_001405_120--Hb_009222_010 Hb_000189_340 Hb_000189_340 Hb_001405_120--Hb_000189_340 Hb_003849_060 Hb_003849_060 Hb_001405_120--Hb_003849_060 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003467_010--Hb_003849_060 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_001575_100 Hb_001575_100 Hb_008055_040--Hb_001575_100 Hb_000365_120 Hb_000365_120 Hb_008055_040--Hb_000365_120 Hb_000174_110 Hb_000174_110 Hb_008055_040--Hb_000174_110 Hb_156973_010 Hb_156973_010 Hb_008055_040--Hb_156973_010 Hb_002175_030 Hb_002175_030 Hb_008055_040--Hb_002175_030 Hb_001105_010 Hb_001105_010 Hb_007632_110--Hb_001105_010 Hb_007632_110--Hb_011942_080 Hb_006355_010 Hb_006355_010 Hb_007632_110--Hb_006355_010 Hb_007632_110--Hb_004450_060 Hb_000207_130 Hb_000207_130 Hb_007632_110--Hb_000207_130 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_009222_010--Hb_000189_340 Hb_000059_140 Hb_000059_140 Hb_009222_010--Hb_000059_140 Hb_009222_010--Hb_011942_080 Hb_009222_010--Hb_003467_010 Hb_001766_150 Hb_001766_150 Hb_000189_340--Hb_001766_150 Hb_001047_100 Hb_001047_100 Hb_000189_340--Hb_001047_100 Hb_105386_010 Hb_105386_010 Hb_000189_340--Hb_105386_010 Hb_001358_030 Hb_001358_030 Hb_000189_340--Hb_001358_030 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010 Hb_000808_250 Hb_000808_250 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003849_060--Hb_011848_010 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.3547 31.1274 34.1713 18.1089 51.1359 61.9588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2231 52.9245 13.2303 36.6433 13.0336

CAGE analysis