Hb_001405_180

Information

Type -
Description -
Location Contig1405: 222722-223450
Sequence    

Annotation

kegg
ID rcu:RCOM_1513780
description zinc finger protein, putative
nr
ID XP_002511529.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9R954
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1513780 PE=4 SV=1
Gene Ontology
ID GO:0046872
description survival factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_180 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_039757_010 0.0039720519 - - -
3 Hb_000426_060 0.0253229584 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
4 Hb_002851_050 0.0339498711 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
5 Hb_000994_090 0.0408293875 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
6 Hb_000426_070 0.0455152364 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
7 Hb_000592_040 0.0463688226 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009897_030 0.0529143303 - - -
9 Hb_000499_050 0.0566851504 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_004767_040 0.0692321681 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
11 Hb_001693_030 0.0765397885 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
12 Hb_117335_020 0.0880680245 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
13 Hb_007943_040 0.0940521216 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
14 Hb_010368_040 0.0957927368 - - conserved hypothetical protein [Ricinus communis]
15 Hb_023675_020 0.1058530055 - - acc synthase, putative [Ricinus communis]
16 Hb_013057_010 0.1071948864 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
17 Hb_006519_010 0.1163219081 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
18 Hb_000261_540 0.118297292 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
19 Hb_093204_010 0.1184207673 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000045_110 0.1226307422 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]

Gene co-expression network

sample Hb_001405_180 Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_001405_180--Hb_039757_010 Hb_000426_060 Hb_000426_060 Hb_001405_180--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_001405_180--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_001405_180--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_001405_180--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_001405_180--Hb_000592_040 Hb_039757_010--Hb_000426_060 Hb_039757_010--Hb_002851_050 Hb_039757_010--Hb_000994_090 Hb_009897_030 Hb_009897_030 Hb_039757_010--Hb_009897_030 Hb_039757_010--Hb_000426_070 Hb_000426_060--Hb_002851_050 Hb_000426_060--Hb_000994_090 Hb_000426_060--Hb_000426_070 Hb_000426_060--Hb_000592_040 Hb_002851_050--Hb_000994_090 Hb_002851_050--Hb_000426_070 Hb_002851_050--Hb_000592_040 Hb_000499_050 Hb_000499_050 Hb_002851_050--Hb_000499_050 Hb_000994_090--Hb_000426_070 Hb_000994_090--Hb_000592_040 Hb_000994_090--Hb_000499_050 Hb_000426_070--Hb_000592_040 Hb_000426_070--Hb_000499_050 Hb_117335_020 Hb_117335_020 Hb_000426_070--Hb_117335_020 Hb_000592_040--Hb_000499_050 Hb_000592_040--Hb_117335_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.301776 0 0.032084 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis