Hb_001405_210

Information

Type -
Description -
Location Contig1405: 254747-264601
Sequence    

Annotation

kegg
ID vvi:100241276
description nicastrin
nr
ID KDP25818.1
description hypothetical protein JCGZ_22540 [Jatropha curcas]
swissprot
ID Q8GUM5
description Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1
trembl
ID A0A067JSP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22540 PE=4 SV=1
Gene Ontology
ID GO:0005773
description nicastrin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10981: 254858-264510 , PASA_asmbl_10982: 255007-257889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_210 0.0 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
2 Hb_007248_030 0.0535001082 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
3 Hb_000046_570 0.059083803 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
4 Hb_007062_040 0.0604712223 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
5 Hb_001856_180 0.0622076071 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
6 Hb_086063_020 0.0626085878 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
7 Hb_004586_060 0.0637646407 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
8 Hb_004102_170 0.0646268997 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
9 Hb_023313_040 0.0652107845 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
10 Hb_000345_160 0.0680188906 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
11 Hb_000702_090 0.0681157476 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
12 Hb_001677_200 0.0719979576 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004705_170 0.0726808807 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
14 Hb_032990_010 0.0734171028 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
15 Hb_000215_300 0.0735898666 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
16 Hb_000962_030 0.0738091562 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
17 Hb_000313_220 0.0743934585 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
18 Hb_000331_090 0.0745624275 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
19 Hb_000019_190 0.0748415935 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
20 Hb_002983_080 0.0756023889 - - acetylornithine aminotransferase, partial [Prunus persica]

Gene co-expression network

sample Hb_001405_210 Hb_001405_210 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_000046_570 Hb_000046_570 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_000702_090 Hb_000702_090 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_007248_030--Hb_001856_180 Hb_000046_570--Hb_007062_040 Hb_000046_570--Hb_004586_060 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_007062_040--Hb_004586_060 Hb_007062_040--Hb_001856_180 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050 Hb_000345_160 Hb_000345_160 Hb_001856_180--Hb_000345_160 Hb_001856_180--Hb_000702_090 Hb_001377_310 Hb_001377_310 Hb_001856_180--Hb_001377_310 Hb_000215_300 Hb_000215_300 Hb_086063_020--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_086063_020--Hb_004037_020 Hb_000258_110 Hb_000258_110 Hb_086063_020--Hb_000258_110 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030 Hb_004586_060--Hb_001377_310 Hb_004586_060--Hb_000702_090 Hb_004586_060--Hb_005460_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.01092 8.30351 10.3675 14.2191 7.36079 8.05636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3287 7.20389 4.14184 8.67968 7.4243

CAGE analysis