Hb_001405_260

Information

Type -
Description -
Location Contig1405: 300964-302322
Sequence    

Annotation

kegg
ID rcu:RCOM_0052090
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_002533474.1
description E3 ubiquitin ligase PUB14, putative [Ricinus communis]
swissprot
ID Q5PNY6
description U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1
trembl
ID B9T5F5
description E3 ubiquitin ligase PUB14, putative OS=Ricinus communis GN=RCOM_0052090 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10986: 301356-301689 , PASA_asmbl_10987: 301715-301906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_260 0.0 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
2 Hb_044026_010 0.0661019013 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
3 Hb_005648_030 0.069231602 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
4 Hb_005643_020 0.0717140616 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
5 Hb_005588_010 0.0831675505 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
6 Hb_078477_010 0.0989392549 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
7 Hb_022630_010 0.101237516 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_002193_050 0.1075154343 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
9 Hb_033153_010 0.1099305516 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
10 Hb_000333_150 0.1113621268 - - hypothetical protein RCOM_0711500 [Ricinus communis]
11 Hb_004157_080 0.1118137034 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
12 Hb_007850_050 0.1152131032 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
13 Hb_110048_010 0.1179112919 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]
14 Hb_000522_120 0.1260205997 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
15 Hb_000959_290 0.1293820878 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
16 Hb_111908_010 0.130822155 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_004117_360 0.1325900689 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
18 Hb_005946_190 0.1328065189 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
19 Hb_189242_010 0.136987036 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
20 Hb_000473_010 0.1378322455 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001405_260 Hb_001405_260 Hb_044026_010 Hb_044026_010 Hb_001405_260--Hb_044026_010 Hb_005648_030 Hb_005648_030 Hb_001405_260--Hb_005648_030 Hb_005643_020 Hb_005643_020 Hb_001405_260--Hb_005643_020 Hb_005588_010 Hb_005588_010 Hb_001405_260--Hb_005588_010 Hb_078477_010 Hb_078477_010 Hb_001405_260--Hb_078477_010 Hb_022630_010 Hb_022630_010 Hb_001405_260--Hb_022630_010 Hb_110048_010 Hb_110048_010 Hb_044026_010--Hb_110048_010 Hb_000333_150 Hb_000333_150 Hb_044026_010--Hb_000333_150 Hb_004157_080 Hb_004157_080 Hb_044026_010--Hb_004157_080 Hb_044026_010--Hb_005648_030 Hb_111908_010 Hb_111908_010 Hb_044026_010--Hb_111908_010 Hb_005648_030--Hb_078477_010 Hb_005648_030--Hb_022630_010 Hb_005648_030--Hb_005588_010 Hb_033153_010 Hb_033153_010 Hb_005648_030--Hb_033153_010 Hb_005643_020--Hb_005588_010 Hb_000522_120 Hb_000522_120 Hb_005643_020--Hb_000522_120 Hb_005643_020--Hb_005648_030 Hb_005643_020--Hb_044026_010 Hb_002193_050 Hb_002193_050 Hb_005643_020--Hb_002193_050 Hb_005588_010--Hb_000522_120 Hb_005588_010--Hb_033153_010 Hb_005588_010--Hb_022630_010 Hb_078477_010--Hb_022630_010 Hb_078477_010--Hb_000333_150 Hb_004656_030 Hb_004656_030 Hb_078477_010--Hb_004656_030 Hb_078477_010--Hb_044026_010 Hb_022630_010--Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_022630_010--Hb_027913_010 Hb_022630_010--Hb_002193_050 Hb_001403_070 Hb_001403_070 Hb_022630_010--Hb_001403_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.71792 0.47226 0.165888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0275486 0 0.132147 0.05738

CAGE analysis