Hb_001408_020

Information

Type -
Description -
Location Contig1408: 2728-25163
Sequence    

Annotation

kegg
ID rcu:RCOM_0758900
description phosphatidylserine decarboxylase, putative (EC:4.1.1.65)
nr
ID XP_012066681.1
description PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
swissprot
ID F4KAK5
description Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=2 SV=1
trembl
ID A0A067LD73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00247 PE=4 SV=1
Gene Ontology
ID GO:0004609
description phosphatidylserine decarboxylase proenzyme 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11020: 2823-25186 , PASA_asmbl_11021: 2888-9978 , PASA_asmbl_11023: 19609-19867 , PASA_asmbl_11024: 18263-18768 , PASA_asmbl_11025: 20326-20457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_020 0.0 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
2 Hb_009078_020 0.08044304 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
3 Hb_000732_230 0.0878955843 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
4 Hb_002809_160 0.0916849893 - - PREDICTED: protein FAM63A [Jatropha curcas]
5 Hb_007290_070 0.0925732213 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
6 Hb_000227_320 0.1014208912 - - unnamed protein product [Vitis vinifera]
7 Hb_187005_010 0.1044744906 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
8 Hb_001499_070 0.1054471461 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
9 Hb_001001_090 0.1072003569 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
10 Hb_000477_070 0.1091001181 - - histone h2a, putative [Ricinus communis]
11 Hb_011188_010 0.1096946362 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
12 Hb_006794_020 0.110396647 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
13 Hb_005288_050 0.1107237465 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
14 Hb_001484_090 0.1110948516 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
15 Hb_001059_060 0.1159385299 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
16 Hb_005885_030 0.1170959993 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_005772_030 0.1172855471 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
18 Hb_083078_010 0.117325509 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
19 Hb_115513_040 0.1174232841 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000470_110 0.1183425109 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_020 Hb_001408_020 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_002809_160 Hb_002809_160 Hb_001408_020--Hb_002809_160 Hb_007290_070 Hb_007290_070 Hb_001408_020--Hb_007290_070 Hb_000227_320 Hb_000227_320 Hb_001408_020--Hb_000227_320 Hb_187005_010 Hb_187005_010 Hb_001408_020--Hb_187005_010 Hb_001059_060 Hb_001059_060 Hb_009078_020--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_009078_020--Hb_002809_160 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_000950_040 Hb_000950_040 Hb_000732_230--Hb_000950_040 Hb_115513_040 Hb_115513_040 Hb_000732_230--Hb_115513_040 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_001414_010 Hb_001414_010 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_007290_070--Hb_187005_010 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_187005_010--Hb_001499_070 Hb_000175_270 Hb_000175_270 Hb_187005_010--Hb_000175_270 Hb_001514_240 Hb_001514_240 Hb_187005_010--Hb_001514_240 Hb_002804_010 Hb_002804_010 Hb_187005_010--Hb_002804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29582 32.2822 28.899 23.2484 9.16971 8.30301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48561 1.78202 1.90421 17.253 26.5227

CAGE analysis