Hb_001408_040

Information

Type -
Description -
Location Contig1408: 31339-38630
Sequence    

Annotation

kegg
ID rcu:RCOM_0759120
description hypothetical protein
nr
ID XP_012066678.1
description PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
swissprot
ID Q9STW5
description MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1
trembl
ID A0A067L1Y7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00244 PE=4 SV=1
Gene Ontology
ID GO:0005886
description macpf domain-containing protein at4g24290 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11027: 36939-37301 , PASA_asmbl_11028: 37786-38474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_040 0.0 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
2 Hb_001635_090 0.0539857928 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
3 Hb_001248_060 0.057069804 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000484_030 0.0592852339 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
5 Hb_002205_110 0.0600338629 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002028_210 0.0623206025 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
7 Hb_010381_090 0.0631502215 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
8 Hb_000696_230 0.0631759312 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
9 Hb_000580_180 0.0643027661 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008453_140 0.0649284603 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
11 Hb_000603_150 0.0659023183 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
12 Hb_000679_310 0.0659517632 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
13 Hb_028285_010 0.0679362233 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
14 Hb_000923_010 0.0686869618 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
15 Hb_010618_010 0.0686931061 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_024958_010 0.0693450471 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
17 Hb_172632_120 0.0694608928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007163_120 0.0695981393 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
19 Hb_001409_020 0.0697450666 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
20 Hb_000334_280 0.0705223795 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_040 Hb_001408_040 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_000116_410 Hb_000116_410 Hb_001635_090--Hb_000116_410 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_007576_110 Hb_007576_110 Hb_001635_090--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670 Hb_010618_010 Hb_010618_010 Hb_001248_060--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_001248_060--Hb_001409_020 Hb_011995_010 Hb_011995_010 Hb_001248_060--Hb_011995_010 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_015934_040 Hb_015934_040 Hb_001248_060--Hb_015934_040 Hb_008453_140 Hb_008453_140 Hb_000484_030--Hb_008453_140 Hb_000484_030--Hb_001409_020 Hb_007416_340 Hb_007416_340 Hb_000484_030--Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_000484_030--Hb_003125_120 Hb_000696_230 Hb_000696_230 Hb_000484_030--Hb_000696_230 Hb_000028_370 Hb_000028_370 Hb_002205_110--Hb_000028_370 Hb_001205_240 Hb_001205_240 Hb_002205_110--Hb_001205_240 Hb_002232_410 Hb_002232_410 Hb_002205_110--Hb_002232_410 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_024621_040 Hb_024621_040 Hb_002028_210--Hb_024621_040 Hb_001473_160 Hb_001473_160 Hb_002028_210--Hb_001473_160 Hb_093458_040 Hb_093458_040 Hb_002028_210--Hb_093458_040 Hb_005653_090 Hb_005653_090 Hb_002028_210--Hb_005653_090 Hb_002492_010 Hb_002492_010 Hb_002028_210--Hb_002492_010 Hb_007416_300 Hb_007416_300 Hb_010381_090--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_010381_090--Hb_002872_030 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2819 15.2954 11.266 15.1945 13.4681 15.9894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5685 16.4408 12.9695 14.121 7.99693

CAGE analysis