Hb_001408_050

Information

Type -
Description -
Location Contig1408: 39069-45973
Sequence    

Annotation

kegg
ID rcu:RCOM_0759140
description hypothetical protein
nr
ID XP_002526449.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0759140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11029: 38997-39143 , PASA_asmbl_11030: 43250-45170 , PASA_asmbl_11031: 45999-46399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003453_030 0.0956407986 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
3 Hb_009823_010 0.0959443417 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
4 Hb_000181_160 0.1074704253 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
5 Hb_001678_030 0.1190309169 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_003576_050 0.1217984117 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
7 Hb_000638_090 0.1272561521 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_004195_170 0.1283299088 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001248_030 0.1330536584 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000976_440 0.1332317336 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000367_310 0.1332358601 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
12 Hb_004657_040 0.1354983091 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
13 Hb_000762_070 0.1360839978 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
14 Hb_002551_090 0.1361135186 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
15 Hb_001454_410 0.1410133873 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
16 Hb_000098_310 0.1477702652 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
17 Hb_000029_370 0.154022828 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_001514_210 0.1541493853 - - hypothetical protein VITISV_012133 [Vitis vinifera]
19 Hb_012807_060 0.1546116031 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001021_030 0.1553241567 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_001408_050 Hb_001408_050 Hb_003453_030 Hb_003453_030 Hb_001408_050--Hb_003453_030 Hb_009823_010 Hb_009823_010 Hb_001408_050--Hb_009823_010 Hb_000181_160 Hb_000181_160 Hb_001408_050--Hb_000181_160 Hb_001678_030 Hb_001678_030 Hb_001408_050--Hb_001678_030 Hb_003576_050 Hb_003576_050 Hb_001408_050--Hb_003576_050 Hb_000638_090 Hb_000638_090 Hb_001408_050--Hb_000638_090 Hb_004195_170 Hb_004195_170 Hb_003453_030--Hb_004195_170 Hb_012807_060 Hb_012807_060 Hb_003453_030--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_003453_030--Hb_022501_020 Hb_001454_410 Hb_001454_410 Hb_003453_030--Hb_001454_410 Hb_009581_050 Hb_009581_050 Hb_003453_030--Hb_009581_050 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_000181_160 Hb_009823_010--Hb_000638_090 Hb_000098_310 Hb_000098_310 Hb_009823_010--Hb_000098_310 Hb_004657_040 Hb_004657_040 Hb_000181_160--Hb_004657_040 Hb_000181_160--Hb_001454_410 Hb_001221_480 Hb_001221_480 Hb_000181_160--Hb_001221_480 Hb_000181_160--Hb_000098_310 Hb_000616_050 Hb_000616_050 Hb_001678_030--Hb_000616_050 Hb_000029_370 Hb_000029_370 Hb_001678_030--Hb_000029_370 Hb_001329_040 Hb_001329_040 Hb_001678_030--Hb_001329_040 Hb_001838_050 Hb_001838_050 Hb_001678_030--Hb_001838_050 Hb_032050_050 Hb_032050_050 Hb_001678_030--Hb_032050_050 Hb_003517_020 Hb_003517_020 Hb_003576_050--Hb_003517_020 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_001248_030 Hb_001248_030 Hb_003576_050--Hb_001248_030 Hb_000928_040 Hb_000928_040 Hb_003576_050--Hb_000928_040 Hb_000638_090--Hb_001248_030 Hb_000638_090--Hb_003576_050 Hb_004218_160 Hb_004218_160 Hb_000638_090--Hb_004218_160 Hb_117168_010 Hb_117168_010 Hb_000638_090--Hb_117168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.515465 12.943 1.93017 6.0695 0.375474 0.506723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.993877 0.613371 0.408455 21.0835 1.69129

CAGE analysis