Hb_001408_060

Information

Type -
Description -
Location Contig1408: 48216-50202
Sequence    

Annotation

kegg
ID egr:104420002
description 60S ribosomal protein L3
nr
ID XP_010030177.1
description PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
swissprot
ID P35684
description 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2
trembl
ID A0A059ATX9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02767 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11032: 48240-52333
cDNA
(Sanger)
(ID:Location)		 025_M05.ab1: 49038-52263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_060 0.0 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
2 Hb_001898_050 0.1078241615 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
3 Hb_000392_550 0.1185464847 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_020025_010 0.1234562213 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
5 Hb_001369_790 0.1242599917 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
6 Hb_000107_150 0.1257997818 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
7 Hb_008695_200 0.1290247957 - - Protein grpE, putative [Ricinus communis]
8 Hb_000510_030 0.1355666466 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
9 Hb_021079_010 0.136146643 - - PREDICTED: histone H2B-like [Populus euphratica]
10 Hb_140627_010 0.1380876691 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004216_060 0.1405286208 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000035_480 0.1442035855 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
13 Hb_004440_060 0.1442666531 - - aldose 1-epimerase, putative [Ricinus communis]
14 Hb_007821_030 0.1446607531 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
15 Hb_007192_030 0.1451368253 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
16 Hb_000733_190 0.1475376813 - - zinc ion binding protein, putative [Ricinus communis]
17 Hb_000210_060 0.1502213587 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
18 Hb_003994_160 0.1504704497 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
19 Hb_000072_200 0.1526267825 - - PREDICTED: myb-like protein X [Jatropha curcas]
20 Hb_001578_020 0.1526773481 - - Protein virR, putative [Ricinus communis]

Gene co-expression network

sample Hb_001408_060 Hb_001408_060 Hb_001898_050 Hb_001898_050 Hb_001408_060--Hb_001898_050 Hb_000392_550 Hb_000392_550 Hb_001408_060--Hb_000392_550 Hb_020025_010 Hb_020025_010 Hb_001408_060--Hb_020025_010 Hb_001369_790 Hb_001369_790 Hb_001408_060--Hb_001369_790 Hb_000107_150 Hb_000107_150 Hb_001408_060--Hb_000107_150 Hb_008695_200 Hb_008695_200 Hb_001408_060--Hb_008695_200 Hb_000210_060 Hb_000210_060 Hb_001898_050--Hb_000210_060 Hb_000330_090 Hb_000330_090 Hb_001898_050--Hb_000330_090 Hb_001898_050--Hb_000392_550 Hb_007199_020 Hb_007199_020 Hb_001898_050--Hb_007199_020 Hb_007904_230 Hb_007904_230 Hb_001898_050--Hb_007904_230 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_000392_550--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_020025_010--Hb_000035_480 Hb_000077_150 Hb_000077_150 Hb_020025_010--Hb_000077_150 Hb_002235_100 Hb_002235_100 Hb_020025_010--Hb_002235_100 Hb_002303_020 Hb_002303_020 Hb_020025_010--Hb_002303_020 Hb_003994_160 Hb_003994_160 Hb_020025_010--Hb_003994_160 Hb_001214_050 Hb_001214_050 Hb_020025_010--Hb_001214_050 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_004440_060 Hb_004440_060 Hb_001369_790--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_008695_200--Hb_003994_160 Hb_002053_010 Hb_002053_010 Hb_008695_200--Hb_002053_010 Hb_008695_200--Hb_000086_080 Hb_008695_200--Hb_001369_790 Hb_003053_110 Hb_003053_110 Hb_008695_200--Hb_003053_110 Hb_008695_200--Hb_007192_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.737 5.12039 23.455 20.8067 6.30302 8.07104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1467 40.1313 8.49869 22.4344 36.3489

CAGE analysis