Hb_001408_080

Information

Type -
Description -
Location Contig1408: 65347-69305
Sequence    

Annotation

kegg
ID rcu:RCOM_0759460
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012066670.1
description PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
swissprot
ID O49545
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1
trembl
ID A0A067L5D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00240 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like serine threonine-protein kinase bam3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11034: 65291-65933 , PASA_asmbl_11035: 65961-69306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_080 0.0 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
2 Hb_001110_060 0.0550686349 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
3 Hb_000849_030 0.0691705626 - - PREDICTED: fimbrin-2 [Jatropha curcas]
4 Hb_001427_100 0.0723325045 - - acc synthase, putative [Ricinus communis]
5 Hb_005111_020 0.0732158296 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
6 Hb_012132_050 0.0799100817 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
7 Hb_036520_030 0.0806307241 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
8 Hb_005741_030 0.0836795435 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
9 Hb_103225_030 0.0862584064 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
10 Hb_004607_060 0.0875166558 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
11 Hb_000012_350 0.0901794017 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
12 Hb_003032_110 0.094149808 - - -
13 Hb_003466_010 0.095216655 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
14 Hb_039946_060 0.0989275677 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
15 Hb_000085_410 0.0990498855 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
16 Hb_000827_020 0.1006573259 - - unnamed protein product [Coffea canephora]
17 Hb_001136_040 0.1038282109 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000020_210 0.1041641065 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
19 Hb_009785_030 0.104971969 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
20 Hb_050898_030 0.1065536586 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001408_080 Hb_001408_080 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001427_100 Hb_001427_100 Hb_001408_080--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_036520_030 Hb_036520_030 Hb_001408_080--Hb_036520_030 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001110_060--Hb_001427_100 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410 Hb_003466_010 Hb_003466_010 Hb_000849_030--Hb_003466_010 Hb_000849_030--Hb_036520_030 Hb_122951_010 Hb_122951_010 Hb_000849_030--Hb_122951_010 Hb_000849_030--Hb_001427_100 Hb_103225_030 Hb_103225_030 Hb_000849_030--Hb_103225_030 Hb_039946_060 Hb_039946_060 Hb_001427_100--Hb_039946_060 Hb_001427_100--Hb_005111_020 Hb_010164_030 Hb_010164_030 Hb_001427_100--Hb_010164_030 Hb_000020_210 Hb_000020_210 Hb_001427_100--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_001427_100--Hb_000012_350 Hb_005111_020--Hb_000020_210 Hb_000000_320 Hb_000000_320 Hb_005111_020--Hb_000000_320 Hb_005111_020--Hb_122951_010 Hb_007904_280 Hb_007904_280 Hb_012132_050--Hb_007904_280 Hb_009783_010 Hb_009783_010 Hb_012132_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_012132_050--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_012132_050--Hb_001136_160 Hb_012132_050--Hb_003466_010 Hb_004032_290 Hb_004032_290 Hb_036520_030--Hb_004032_290 Hb_036520_030--Hb_001427_100 Hb_002874_200 Hb_002874_200 Hb_036520_030--Hb_002874_200 Hb_036520_030--Hb_003466_010 Hb_036520_030--Hb_010164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0160636 1.81872 3.0017 8.75945 0.0303756 0.0233887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.156235 2.44636

CAGE analysis