Hb_001408_090

Information

Type -
Description -
Location Contig1408: 76336-83746
Sequence    

Annotation

kegg
ID rcu:RCOM_0759470
description yth domain-containing protein, putative
nr
ID XP_012066665.1
description PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067LD65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00237 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11036: 76326-83801 , PASA_asmbl_11037: 77476-77728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_090 0.0 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
2 Hb_000025_750 0.0743663832 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
3 Hb_003216_110 0.0812962681 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
4 Hb_001227_110 0.0847523802 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
5 Hb_002025_140 0.0851467187 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_000331_480 0.086844954 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
7 Hb_001498_030 0.090679657 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
8 Hb_000230_370 0.0916670523 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
9 Hb_005725_070 0.0969112735 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007305_010 0.0980284822 - - PREDICTED: girdin-like [Jatropha curcas]
11 Hb_005144_040 0.0986152668 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
12 Hb_000573_040 0.0990351434 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
13 Hb_012760_200 0.0998327535 - - protein phsophatase-2a, putative [Ricinus communis]
14 Hb_018663_020 0.1017980272 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
15 Hb_005028_010 0.1033176768 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
16 Hb_001226_180 0.1038593069 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
17 Hb_000640_210 0.1041010776 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
18 Hb_001034_020 0.1083119397 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
19 Hb_060437_010 0.1089025741 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
20 Hb_004531_090 0.1093889692 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_090 Hb_001408_090 Hb_000025_750 Hb_000025_750 Hb_001408_090--Hb_000025_750 Hb_003216_110 Hb_003216_110 Hb_001408_090--Hb_003216_110 Hb_001227_110 Hb_001227_110 Hb_001408_090--Hb_001227_110 Hb_002025_140 Hb_002025_140 Hb_001408_090--Hb_002025_140 Hb_000331_480 Hb_000331_480 Hb_001408_090--Hb_000331_480 Hb_001498_030 Hb_001498_030 Hb_001408_090--Hb_001498_030 Hb_000025_750--Hb_001227_110 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000093_130 Hb_000093_130 Hb_000025_750--Hb_000093_130 Hb_000025_750--Hb_002025_140 Hb_000230_370 Hb_000230_370 Hb_003216_110--Hb_000230_370 Hb_003216_110--Hb_002025_140 Hb_001969_040 Hb_001969_040 Hb_003216_110--Hb_001969_040 Hb_005028_010 Hb_005028_010 Hb_003216_110--Hb_005028_010 Hb_002986_050 Hb_002986_050 Hb_003216_110--Hb_002986_050 Hb_000016_280 Hb_000016_280 Hb_001227_110--Hb_000016_280 Hb_001227_110--Hb_000093_130 Hb_000640_210 Hb_000640_210 Hb_001227_110--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_001227_110--Hb_025048_040 Hb_000573_040 Hb_000573_040 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_000331_480--Hb_001034_020 Hb_000331_480--Hb_025048_040 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000212_280 Hb_000212_280 Hb_000331_480--Hb_000212_280 Hb_012760_200 Hb_012760_200 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_002133_030 Hb_002133_030 Hb_001498_030--Hb_002133_030 Hb_005144_040 Hb_005144_040 Hb_001498_030--Hb_005144_040 Hb_001498_030--Hb_001969_040 Hb_005725_070 Hb_005725_070 Hb_001498_030--Hb_005725_070 Hb_004724_360 Hb_004724_360 Hb_001498_030--Hb_004724_360 Hb_042083_070 Hb_042083_070 Hb_001498_030--Hb_042083_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
398.609 103.381 66.1635 37.107 289.126 295.387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.057 36.8005 97.9155 72.4314 22.9362

CAGE analysis