Hb_001408_100

Information

Type -
Description -
Location Contig1408: 84999-92742
Sequence    

Annotation

kegg
ID rcu:RCOM_0759480
description pseudouridylate synthase, putative (EC:5.4.99.12)
nr
ID XP_002526453.1
description pseudouridylate synthase, putative [Ricinus communis]
swissprot
ID Q168C1
description tRNA pseudouridine synthase A OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=truA PE=3 SV=1
trembl
ID B9SKD4
description tRNA pseudouridine synthase OS=Ricinus communis GN=RCOM_0759480 PE=3 SV=1
Gene Ontology
ID GO:0003723
description trna pseudouridine synthase-like 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11039: 85752-91650 , PASA_asmbl_11040: 85060-90619 , PASA_asmbl_11041: 91683-92773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_100 0.0 - - pseudouridylate synthase, putative [Ricinus communis]
2 Hb_003029_030 0.0644518446 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
3 Hb_131646_010 0.0686641838 - - protein arginine n-methyltransferase, putative [Ricinus communis]
4 Hb_000160_350 0.0756659918 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
5 Hb_005965_030 0.0781143134 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
6 Hb_002157_260 0.080139632 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
7 Hb_000771_180 0.0810199765 - - polypyrimidine tract binding protein, putative [Ricinus communis]
8 Hb_004785_100 0.0821299306 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000334_270 0.0831943509 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_010068_040 0.0835368022 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
11 Hb_002686_250 0.0837170445 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
12 Hb_002351_020 0.0869824823 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
13 Hb_020367_050 0.0871566959 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
14 Hb_003124_220 0.0910770769 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
15 Hb_032208_040 0.0911453951 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
16 Hb_000181_110 0.0911829775 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
17 Hb_003849_060 0.0943892073 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
18 Hb_079526_030 0.0953711742 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
19 Hb_000649_070 0.0960253779 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
20 Hb_111198_010 0.0966710147 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_100 Hb_001408_100 Hb_003029_030 Hb_003029_030 Hb_001408_100--Hb_003029_030 Hb_131646_010 Hb_131646_010 Hb_001408_100--Hb_131646_010 Hb_000160_350 Hb_000160_350 Hb_001408_100--Hb_000160_350 Hb_005965_030 Hb_005965_030 Hb_001408_100--Hb_005965_030 Hb_002157_260 Hb_002157_260 Hb_001408_100--Hb_002157_260 Hb_000771_180 Hb_000771_180 Hb_001408_100--Hb_000771_180 Hb_002686_250 Hb_002686_250 Hb_003029_030--Hb_002686_250 Hb_003029_030--Hb_131646_010 Hb_033720_010 Hb_033720_010 Hb_003029_030--Hb_033720_010 Hb_002351_020 Hb_002351_020 Hb_003029_030--Hb_002351_020 Hb_010068_040 Hb_010068_040 Hb_003029_030--Hb_010068_040 Hb_131646_010--Hb_002686_250 Hb_004785_100 Hb_004785_100 Hb_131646_010--Hb_004785_100 Hb_002835_230 Hb_002835_230 Hb_131646_010--Hb_002835_230 Hb_002078_110 Hb_002078_110 Hb_131646_010--Hb_002078_110 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_000160_350--Hb_005965_030 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000160_350--Hb_000771_180 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060 Hb_005965_030--Hb_002157_260 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_005965_030--Hb_022256_060 Hb_002045_150 Hb_002045_150 Hb_002157_260--Hb_002045_150 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_050847_020 Hb_050847_020 Hb_000771_180--Hb_050847_020 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52318 7.10268 8.49868 2.92433 11.1625 7.49438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82873 6.20823 3.99877 4.99221 2.81802

CAGE analysis