Hb_001408_140

Information

Type -
Description -
Location Contig1408: 108413-116823
Sequence    

Annotation

kegg
ID tcc:TCM_006174
description hypothetical protein
nr
ID KDP42437.1
description hypothetical protein JCGZ_00234 [Jatropha curcas]
swissprot
ID F1R5H6
description Bromodomain-containing protein 4 OS=Danio rerio GN=brd4 PE=1 SV=1
trembl
ID A0A067L1Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00234 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11048: 108621-111692 , PASA_asmbl_11049: 112133-112275 , PASA_asmbl_11050: 112320-113738 , PASA_asmbl_11051: 115977-116268 , PASA_asmbl_11052: 116294-116677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_140 0.0 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
2 Hb_105105_010 0.0462292205 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
3 Hb_001195_530 0.0523895057 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003464_090 0.0554708183 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
5 Hb_021419_030 0.0580547027 - - hypothetical protein glysoja_023295 [Glycine soja]
6 Hb_093458_040 0.0591963571 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_000340_530 0.0592424769 - - hypothetical protein VITISV_016664 [Vitis vinifera]
8 Hb_002205_250 0.0612868501 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
9 Hb_007894_110 0.0614462461 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
10 Hb_003428_010 0.0615570924 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
11 Hb_000359_040 0.061746579 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001221_080 0.0621449298 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
13 Hb_005867_070 0.0633738344 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000915_180 0.0645453994 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
15 Hb_001456_060 0.064550939 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
16 Hb_009911_030 0.0654869016 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
17 Hb_003861_050 0.065645288 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
18 Hb_000696_230 0.0663339794 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
19 Hb_013399_020 0.0663931325 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
20 Hb_024621_040 0.0678227397 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]

Gene co-expression network

sample Hb_001408_140 Hb_001408_140 Hb_105105_010 Hb_105105_010 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_002205_250 Hb_002205_250 Hb_105105_010--Hb_002205_250 Hb_105105_010--Hb_001195_530 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_020831_030 Hb_020831_030 Hb_001195_530--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_001195_530--Hb_002205_250 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_000915_180 Hb_000915_180 Hb_021419_030--Hb_000915_180 Hb_123915_040 Hb_123915_040 Hb_021419_030--Hb_123915_040 Hb_000905_110 Hb_000905_110 Hb_021419_030--Hb_000905_110 Hb_021419_030--Hb_000340_530 Hb_000336_210 Hb_000336_210 Hb_021419_030--Hb_000336_210 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22777 5.58069 5.6023 4.93842 5.27457 4.43158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88219 4.9391 5.49426 5.49952 4.33661

CAGE analysis