Hb_001409_020

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1409: 24419-26200
Sequence    

Annotation

kegg
ID tcc:TCM_029329
description Mitochondrial transcription termination factor family protein, putative
nr
ID XP_012077865.1
description PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KMR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13543 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11065: 25194-25608 , PASA_asmbl_11067: 25915-26288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001409_020 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
2 Hb_010618_010 0.0393321404 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
3 Hb_001248_060 0.0436516663 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013399_100 0.0438492281 - - conserved hypothetical protein [Ricinus communis]
5 Hb_167498_010 0.0473443763 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
6 Hb_008406_200 0.0501089956 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
7 Hb_007576_110 0.0546048485 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
8 Hb_000060_090 0.0550489516 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
9 Hb_000484_030 0.0552983142 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
10 Hb_011995_010 0.0556041773 - - dc50, putative [Ricinus communis]
11 Hb_016172_020 0.0583476598 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
12 Hb_002518_280 0.0586799708 - - phosphate transporter [Manihot esculenta]
13 Hb_000789_310 0.0597033187 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
14 Hb_006634_070 0.0597154415 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
15 Hb_000345_380 0.0598832469 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
16 Hb_000030_190 0.0609680056 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
17 Hb_000366_120 0.0618822814 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
18 Hb_000173_490 0.0627422413 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
19 Hb_015934_040 0.0629175112 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
20 Hb_011037_030 0.0629468818 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]

Gene co-expression network

sample Hb_001409_020 Hb_001409_020 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_010618_010--Hb_001248_060 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010 Hb_001248_060--Hb_011995_010 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_013399_100--Hb_010618_010 Hb_001369_730 Hb_001369_730 Hb_167498_010--Hb_001369_730 Hb_003158_010 Hb_003158_010 Hb_167498_010--Hb_003158_010 Hb_000329_470 Hb_000329_470 Hb_167498_010--Hb_000329_470 Hb_167498_010--Hb_000225_040 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_005653_090 Hb_005653_090 Hb_008406_200--Hb_005653_090 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.36141 4.10898 2.91543 3.31652 4.14142 4.83027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9279 3.63581 4.27571 3.27454 3.1474

CAGE analysis